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Add module for GSEA analysis with clusterProfiler #9

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grst opened this issue Nov 17, 2021 · 0 comments

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grst commented Nov 17, 2021

Input:

DE genes (ranked gene list)
Database (e.g. KEGG, Reactome, ...)

Output:

Table
Plot

The module should take the database as an input channel such that the pipeline can run the processes in parallel for all databases.

Section in old code:
https://github.com/icbi-lab/deseq2icbi/blob/28e54a75598d39b70090376daa0e9ddefee25363/runDESeq2_ICBI.R#L404-L477

Related: #8

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