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failed to open/build the index #58

@ali21049

Description

@ali21049

Hi
Thank you for the great tool, I am running compleasm on example datasets, compleasm run completes without busco lineage but with lineage dataset it gives error
I am getting the following error

compleasm.py:415: SyntaxWarning: invalid escape sequence '['
"[^0-9][0-9]:[0-9][^0-9]{0,1}[0-9][^0-9]{0,2}[0-9][%s]"
Searching for miniprot in the path where compleasm.py is located
Searching for hmmsearch in the path where compleasm.py is located
miniprot execute command:
/u/sayyadb/programs/compleasm_kit/miniprot
lineage: eukaryota_odb10
[ERROR] failed to open/build the index
Traceback (most recent call last):
File "/u/sayyadb/programs/compleasm_kit/compleasm.py", line 2715, in
main()
File "/u/sayyadb/programs/compleasm_kit/compleasm.py", line 2711, in main
args.func(args)
File "/u/sayyadb/programs/compleasm_kit/compleasm.py", line 2592, in run
mr.Run()
File "/u/sayyadb/programs/compleasm_kit/compleasm.py", line 2137, in Run
miniprot_output_path = self.miniprot_runner.run_miniprot(self.assembly_path,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/u/sayyadb/programs/compleasm_kit/compleasm.py", line 303, in run_miniprot
raise Exception("miniprot exited with non-zero exit code: {}".format(exitcode))
Exception: miniprot exited with non-zero exit code: 1

my command is
u/sayyadb/programs/compleasm_kit/compleasm.py run -l eukaryota_odb10 -L mb_downloads -a /u/sayyadb/programs/BRAKER-master/example/braker/genome.fa -t 1 -o compleasm_genome_out

I tried running miniprot separately it runs fine, I used following command
miniprot --trans -u -I --outs=0.95 --gff -t 1 genome.fa mb_downloads/eukaryota_odb10/refseq_db.faa.gz > output.gff

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