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%% This BibTeX bibliography file was created using BibDesk.
%% http://bibdesk.sourceforge.net/
%% Created for Robert Hetland at 2018-06-11 13:33:03 -0500
%% Saved with string encoding Unicode (UTF-8)
@article{geyer.ea:17,
Author = {Geyer, W Rockwell and Ralston, David K and Holleman, Rusty C},
Date-Added = {2018-06-11 18:32:14 +0000},
Date-Modified = {2018-06-11 18:33:03 +0000},
Journal = {Journal of Geophysical Research: Oceans},
Publisher = {Wiley Online Library},
Title = {Hydraulics and mixing in a laterally divergent channel of a highly stratified estuary},
Year = {2017}}
@article{scully2010turbulent,
Author = {Scully, Malcolm and Ralston, David K and Lerczak, James A and Geyer, W Rockwell},
Date-Added = {2018-06-11 18:31:30 +0000},
Date-Modified = {2018-06-11 18:31:38 +0000},
Title = {Turbulent mixing in a strongly forced salt wedge estuary},
Year = {2010}}
@incollection{hetland.zhang:17,
Author = {Hetland, Robert D and Zhang, Xiaoqian},
Booktitle = {Modeling Coastal Hypoxia},
Date-Added = {2018-04-25 18:54:52 +0000},
Date-Modified = {2018-04-25 18:55:16 +0000},
Pages = {49--60},
Publisher = {Springer},
Title = {{Interannual Variation in Stratification over the Texas--Louisiana Continental Shelf and Effects on Seasonal Hypoxia}},
Year = {2017}}
@article{thyng.hetland:17,
Author = {Thyng, Kristen M and Hetland, Robert D},
Journal = {Marine pollution bulletin},
Number = {1-2},
Pages = {226--233},
Publisher = {Pergamon},
Title = {Texas and Louisiana coastal vulnerability and shelf connectivity},
Volume = {116},
Year = {2017}}
@misc{justic.ea:17,
Author = {Justic, Dubravko and Rose, Kenneth A and Hetland, Robert D and Fennel, Katja},
Publisher = {Springer},
Title = {Modeling Coastal Hypoxia: Numerical Simulations of Patterns, Controls and Effects of Dissolved Oxygen Dynamics},
Year = {2017}}
@incollection{hetland.zhang:2017,
Author = {Hetland, Robert D and Zhang, Xiaoqian},
Booktitle = {Modeling Coastal Hypoxia},
Pages = {49--60},
Publisher = {Springer, Cham},
Title = {Interannual Variation in Stratification over the Texas--Louisiana Continental Shelf and Effects on Seasonal Hypoxia},
Year = {2017}}
@incollection{rose.ea:17,
Author = {Rose, Kenneth A and Justic, Dubravko and Fennel, Katja and Hetland, Robert D},
Booktitle = {Modeling Coastal Hypoxia},
Pages = {401--421},
Publisher = {Springer, Cham},
Title = {Numerical modeling of hypoxia and its effects: synthesis and going forward},
Year = {2017}}
@article{rayson.ea:17,
Author = {Rayson, Matthew D and Gross, Edward S and Hetland, Robert D and Fringer, Oliver B},
Journal = {Journal of Physical Oceanography},
Number = {11},
Pages = {2811--2828},
Title = {Using an Isohaline Flux Analysis to Predict the Salt Content in an Unsteady Estuary},
Volume = {47},
Year = {2017}}
@article{qu.ea:17,
Author = {Qu, Lixin and Lin, Xiaopei and Hetland, Robert D and Guo, Jingsong},
Journal = {Journal of Geophysical Research: Oceans},
Title = {The Asymmetric Continental Shelf Wave in Response to the Synoptic Wind Burst in a Semienclosed Double-Shelf Basin},
Year = {2017}}
@article{zhang.hetland:18,
Author = {Zhang, Wenxia and Hetland, Robert D},
Journal = {Journal of Geophysical Research: Oceans},
Title = {A Study of Baroclinic Instability Induced Convergence Near the Bottom Using Water Age Simulations},
Year = {2018}}
@article{obenour.ea:15,
Author = {Obenour, Daniel R and Michalak, Anna M and Scavia, Donald},
Date-Added = {2017-10-25 14:38:53 +0000},
Date-Modified = {2017-10-25 14:39:26 +0000},
Journal = {Ecological Applications},
Number = {2},
Pages = {492--505},
Publisher = {Wiley Online Library},
Title = {{Assessing biophysical controls on Gulf of Mexico hypoxia through probabilistic modeling}},
Volume = {25},
Year = {2015}}
@article{yuan.horner-devine:13,
Author = {Yuan, Yeping and Horner-Devine, Alexander R},
Date-Added = {2017-05-02 18:40:41 +0000},
Date-Modified = {2017-05-02 18:41:07 +0000},
Journal = {{J. Phys. Oceanogr.}},
Number = {12},
Pages = {2588--2610},
Title = {Laboratory investigation of the impact of lateral spreading on buoyancy flux in a river plume},
Volume = {43},
Year = {2013}}
@article{bacosa2016tarballs,
Author = {Bacosa, Hernando P and Thyng, Kristen M and Plunkett, Stefanie and Erdner, Deana L and Liu, Zhanfei},
Date-Added = {2017-03-07 23:03:47 +0000},
Date-Modified = {2017-03-07 23:03:54 +0000},
Journal = {Marine pollution bulletin},
Number = {1},
Pages = {236--244},
Publisher = {Pergamon},
Title = {The tarballs on Texas beaches following the 2014 Texas City ``Y'' Spill: Modeling, chemical, and microbiological studies},
Volume = {109},
Year = {2016}}
@article{goodman2011observing,
Author = {Goodman, Louis and Sastre-C{\'o}rdova, Marcos M},
Date-Added = {2017-02-13 23:26:47 +0000},
Date-Modified = {2017-02-13 23:26:47 +0000},
Journal = {The Journal of the Acoustical Society of America},
Number = {2},
Pages = {707--715},
Publisher = {ASA},
Title = {On observing acoustic backscattering from salinity turbulence},
Volume = {130},
Year = {2011}}
@article{wilson.ea:16,
Author = {Wilson, Greg and Bryan, Jennifer and Cranston, Karen and Kitzes, Justin and Nederbragt, Lex and Teal, Tracy K},
Date-Added = {2017-02-08 15:30:24 +0000},
Date-Modified = {2017-02-08 15:30:40 +0000},
Journal = {arXiv preprint arXiv:1609.00037},
Title = {{Good Enough Practices in Scientific Computing}},
Year = {2016}}
@article{zhu..ea:15,
Author = {Zhu, Jun and Weisberg, Robert H and Zheng, Lianyuan and Han, Shuzong},
Date-Added = {2017-02-08 03:07:29 +0000},
Date-Modified = {2017-02-08 03:07:51 +0000},
Journal = {Estuaries and coasts},
Number = {1},
Pages = {132--150},
Publisher = {Springer},
Title = {{Influences of channel deepening and widening on the tidal and nontidal circulations of Tampa Bay}},
Volume = {38},
Year = {2015}}
@article{dejonge.ea:14,
Author = {de Jonge, Victor N and Schuttelaars, Henk M and van Beusekom, Justus EE and Talke, Stefan A and de Swart, Huib E},
Date-Added = {2017-02-08 03:05:58 +0000},
Date-Modified = {2017-02-08 03:06:20 +0000},
Journal = {Estuarine, Coastal and Shelf Science},
Pages = {46--59},
Publisher = {Elsevier},
Title = {The influence of channel deepening on estuarine turbidity levels and dynamics, as exemplified by the Ems estuary},
Volume = {139},
Year = {2014}}
@article{valle-levinson:08,
Author = {Valle-Levinson, Arnoldo},
Date-Added = {2017-02-07 03:21:26 +0000},
Date-Modified = {2017-02-07 03:21:39 +0000},
Journal = {Journal of Geophysical Research: Oceans},
Number = {C4},
Publisher = {Wiley Online Library},
Title = {Density-driven exchange flow in terms of the Kelvin and Ekman numbers},
Volume = {113},
Year = {2008}}
@inproceedings{mccartney.ea:05,
Author = {McCartney, Bruce L and Ebner, Laurie L and Hales, Lyndell Z and Nelson, Eric E},
Date-Added = {2017-02-07 03:07:32 +0000},
Date-Modified = {2017-02-07 03:07:43 +0000},
Organization = {American Society of Civil Engineers},
Title = {Ship channel design and operation},
Year = {2005}}
@article{wolfram.ea:13,
Author = {Wolfram, Phillip J and Fringer, Oliver B},
Date-Added = {2017-02-03 19:41:28 +0000},
Date-Modified = {2017-02-03 19:42:18 +0000},
Journal = {{Ocean Modelling}},
Pages = {64--78},
Publisher = {Elsevier},
Title = {{Mitigating horizontal divergence checker-board oscillations on unstructured triangular C-grids for nonlinear hydrostatic and nonhydrostatic flows}},
Volume = {69},
Year = {2013}}
@article{holleman.ea:13,
Author = {Holleman, Rusty and Fringer, Oliver and Stacey, Mark},
Date-Added = {2017-02-03 19:38:43 +0000},
Date-Modified = {2017-02-03 19:39:14 +0000},
Journal = {{International Journal for Numerical Methods in Fluids}},
Number = {11},
Pages = {1117--1145},
Publisher = {Wiley Online Library},
Title = {{Numerical diffusion for flow-aligned unstructured grids with application to estuarine modeling}},
Volume = {72},
Year = {2013}}
@article{gregg.horne:09,
Author = {Gregg, Michael C and Horne, John K},
Date-Added = {2017-02-03 00:47:08 +0000},
Date-Modified = {2017-02-03 00:59:44 +0000},
Journal = {Journal of Physical Oceanography},
Number = {5},
Pages = {1097--1114},
Title = {Turbulence, acoustic backscatter, and pelagic nekton in Monterey Bay},
Volume = {39},
Year = {2009}}
@article{simpson.ea:81,
Author = {Simpson, JH and Crisp, DJ and Hearn, C},
Date-Added = {2017-02-03 00:11:26 +0000},
Date-Modified = {2017-02-03 00:11:40 +0000},
Journal = {Philosophical Transactions of the Royal Society of London A: Mathematical, Physical and Engineering Sciences},
Number = {1472},
Pages = {531--546},
Publisher = {The Royal Society},
Title = {{The shelf-sea fronts: implications of their existence and behaviour [and discussion]}},
Volume = {302},
Year = {1981}}
@article{hetland:17,
Author = {Hetland, Robert D},
Date-Added = {2017-01-06 04:13:12 +0000},
Date-Modified = {2017-01-06 04:13:37 +0000},
Journal = {{J. Phys. Oceanog.}},
Number = {1},
Pages = {49--68},
Title = {{Suppression of Baroclinic Instabilities in Buoyancy-Driven Flow over Sloping Bathymetry}},
Volume = {47},
Year = {2017}}
@article{passow.hetland:16,
Author = {Passow, Uta and Hetland, Robert D},
Date-Added = {2017-01-06 04:11:45 +0000},
Date-Modified = {2017-01-06 04:12:40 +0000},
Journal = {Oceanography},
Number = {3},
Pages = {88--95},
Title = {{What Happened to All of the Oil?}},
Volume = {29},
Year = {2016}}
@article{thyng.ea:16,
Author = {Thyng, Kristen M and Greene, Chad A and Hetland, Robert D and Zimmerle, Heather M and DiMarco, Steven F},
Date-Added = {2017-01-06 04:09:45 +0000},
Date-Modified = {2017-01-06 04:11:34 +0000},
Journal = {Oceanography},
Number = {3},
Pages = {9--13},
Title = {{True Colors of Oceanography: Guidelines for Effective and Accurate Colormap Selection}},
Volume = {29},
Year = {2016}}
@article{fennel.ea:16,
Author = {Fennel, Katja and Laurent, Arnaud and Hetland, Robert and Justi{\'c}, Dubravko and Ko, Dong S and Lehrter, John and Murrell, Michael and Wang, Lixia and Yu, Liuqian and Zhang, Wenxia},
Date-Added = {2017-01-06 04:08:53 +0000},
Date-Modified = {2017-01-06 04:09:28 +0000},
Journal = {{J. Geophys. Res.}},
Number = {8},
Pages = {5731--5750},
Title = {{Effects of model physics on hypoxia simulations for the northern Gulf of Mexico: A model intercomparison}},
Volume = {121},
Year = {2016}}
@article{rayson.ea:16,
Author = {Rayson, Matthew D and Gross, Edward S and Hetland, Robert D and Fringer, Oliver B},
Date-Added = {2017-01-06 04:07:34 +0000},
Date-Modified = {2017-01-06 04:08:09 +0000},
Journal = {{J. Geophys. Res.}},
Number = {4},
Pages = {2268--2285},
Title = {{Time scales in Galveston Bay: An unsteady estuary}},
Volume = {121},
Year = {2016}}
@article{cole.hetland:16,
Author = {Cole, Kelly L and Hetland, Robert D},
Date-Added = {2017-01-06 04:07:05 +0000},
Date-Modified = {2017-01-06 04:07:28 +0000},
Journal = {Journal of Physical Oceanography},
Number = {5},
Pages = {1421--1436},
Title = {The Effects of Rotation and River Discharge on Net Mixing in Small-Mouth Kelvin Number Plumes},
Volume = {46},
Year = {2016}}
@article{xu.ea:16,
Author = {Xu, Kehui and Mickey, Rangley C and Chen, Qin and Harris, Courtney K and Hetland, Robert D and Hu, Kelin and Wang, Jiaze},
Date-Added = {2017-01-06 04:06:44 +0000},
Date-Modified = {2017-01-06 04:07:03 +0000},
Journal = {Computers \& Geosciences},
Pages = {24--39},
Publisher = {Pergamon},
Title = {Shelf sediment transport during hurricanes katrina and rita},
Volume = {90},
Year = {2016}}
@article{laurent.ea:16,
Author = {Laurent, A and Fennel, K and Wilson, R and Lehrter, J and Devereux, R},
Date-Added = {2016-09-20 00:02:52 +0000},
Date-Modified = {2016-09-20 00:03:45 +0000},
Journal = {Biogeosciences},
Number = {1},
Pages = {77},
Publisher = {Copernicus GmbH},
Title = {Parameterization of biogeochemical sediment-water fluxes using in situ measurements and a diagenetic model},
Volume = {13},
Year = {2016}}
@article{bacosa.ea:16,
Author = {Bacosa, Hernando P and Thyng, Kristen M and Plunkett, Stefanie and Erdner, Deana L and Liu, Zhanfei},
Date-Added = {2016-09-19 18:23:13 +0000},
Date-Modified = {2016-09-19 18:23:30 +0000},
Journal = {Marine Pollution Bulletin},
Publisher = {Pergamon},
Title = {The tarballs on Texas beaches following the 2014 Texas City ``Y'' Spill: Modeling, chemical, and microbiological studies},
Year = {2016}}
@inproceedings{thyng.hetland:14,
Author = {Thyng, Kristen M and Hetland, Robert D},
Booktitle = {Proc. of the 13th Python in Science Conf, 2014.(SciPy 2014)},
Date-Added = {2016-09-19 18:22:14 +0000},
Date-Modified = {2016-09-19 18:22:42 +0000},
Title = {TracPy: Wrapping the Fortran Lagrangian trajectory model TRACMASS},
Year = {2014}}
@book{salmon:98,
Author = {Salmon, Rick},
Date-Added = {2016-08-24 13:52:33 +0000},
Date-Modified = {2016-08-24 13:52:46 +0000},
Publisher = {Oxford University Press},
Title = {{Lectures on geophysical fluid dynamics}},
Year = {1998}}
@book{vallis:06,
Author = {Vallis, Geoffrey K},
Date-Added = {2016-08-24 13:50:42 +0000},
Date-Modified = {2016-08-24 13:51:02 +0000},
Publisher = {Cambridge University Press},
Title = {{Atmospheric and oceanic fluid dynamics: fundamentals and large-scale circulation}},
Year = {2006}}
@book{tennekes.lumley:72,
Author = {Tennekes, Hendrik and Lumley, John Leask},
Date-Added = {2016-08-24 13:49:45 +0000},
Date-Modified = {2016-08-24 13:50:03 +0000},
Publisher = {MIT press},
Title = {A first course in turbulence},
Year = {1972}}
@article{rayson.ea:15,
Author = {Rayson, Matthew D and Gross, Edward S and Fringer, Oliver B},
Date-Added = {2016-04-12 16:44:08 +0000},
Date-Modified = {2016-04-12 16:44:52 +0000},
Journal = {Ocean Modelling},
Pages = {29--44},
Publisher = {Elsevier},
Title = {Modeling the tidal and sub-tidal hydrodynamics in a shallow, micro-tidal estuary},
Volume = {89},
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Author = {Jay, David A and Zaron, Edward D and Pan, Jiayi},
Date-Added = {2013-03-09 23:43:04 +0000},
Date-Modified = {2013-03-09 23:43:40 +0000},
Journal = {Journal of Geophysical Research},
Number = {C2},
Pages = {C00B15, DOI: 10.1029/2008JC004996},
Publisher = {American Geophysical Union},
Title = {{Initial expansion of the Columbia River tidal plume: Theory and remote sensing observations}},
Volume = {115},
Year = {2010}}
@article{winters.ea:95,
Author = {Winters, Kraig B and Lombard, Peter N and Riley, James J and D'Asaro, Eric A},
Date-Added = {2013-03-08 15:59:28 +0000},
Date-Modified = {2013-03-08 16:00:03 +0000},