Initial commit

Author: chiara-fb

.github/workflows/ci-testing.yml

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+name: CI testing
+
+# see: https://help.github.com/en/actions/reference/events-that-trigger-workflows
+on:
+  # Trigger the workflow on push or pull request, but only for the master branch
+  push:
+    branches:
+      - master
+  pull_request:
+    branches:
+      - master
+
+jobs:
+  pytest:
+
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-20.04, macOS-10.15, windows-2019]
+        python-version: [3.7]
+
+    # Timeout: https://stackoverflow.com/a/59076067/4521646
+    timeout-minutes: 35
+
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v2
+      with:
+        python-version: ${{ matrix.python-version }}
+
+    # Github Actions: Run step on specific OS: https://stackoverflow.com/a/57948488/4521646
+    - name: Setup macOS
+      if: runner.os == 'macOS'
+      run: |
+        brew install libomp  # https://github.com/pytorch/pytorch/issues/20030
+
+    # Note: This uses an internal pip API and may not always work
+    # https://github.com/actions/cache/blob/master/examples.md#multiple-oss-in-a-workflow
+    - name: Get pip cache
+      id: pip-cache
+      run: |
+        python -c "from pip._internal.locations import USER_CACHE_DIR; print('::set-output name=dir::' + USER_CACHE_DIR)"
+
+    - name: Cache pip
+      uses: actions/cache@v2
+      with:
+        path: ${{ steps.pip-cache.outputs.dir }}
+        key: ${{ runner.os }}-py${{ matrix.python-version }}-${{ hashFiles('requirements.txt') }}
+        restore-keys: |
+          ${{ runner.os }}-py${{ matrix.python-version }}-
+
+    - name: Install dependencies
+      run: |
+        pip install --requirement requirements.txt --upgrade --quiet --find-links https://download.pytorch.org/whl/cpu/torch_stable.html --use-feature=2020-resolver
+        pip install --requirement tests/requirements.txt --quiet --use-feature=2020-resolver
+        python --version
+        pip --version
+        pip list
+      shell: bash
+
+    - name: Tests
+      run: |
+        coverage run --source project -m py.test project tests -v --junitxml=junit/test-results-${{ runner.os }}-${{ matrix.python-version }}.xml
+
+    - name: Statistics
+      if: success()
+      run: |
+        coverage report

.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+.github
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# Lightning /research  
+test_tube_exp/
+tests/tests_tt_dir/
+tests/save_dir
+default/   
+data/
+test_tube_logs/
+test_tube_data/
+datasets/
+model_weights/
+tests/save_dir  
+tests/tests_tt_dir/
+processed/
+raw/
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# pyenv
+.python-version
+
+# celery beat schedule file
+celerybeat-schedule
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+
+# IDEs
+.idea
+.vscode
+
+# seed project
+lightning_logs/
+MNIST
+.DS_Store