OutOfMemoryError: Java heap space in fix' "lookup"

[dr0i]

2025-01-07 04:48:58 [INFO] org.metafacture.metafix.Metafix in Thread-15 - Current record: {leader=01408nas a2200337#c 4500, 005=20171201161000.0, 007=tu, 008=030409c19849999xxuu||p| ||| 0||||1eng c, 003=DE-605, 001=990119738560206441

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a=23384881620006443, c=Zs-Auslage, r=ACQ, q=52.2024, No.2, W=2024-02-22 11:20:21 Europe/Berlin, u=X0081, w=X0081}, {H=22238169260006443, x=81P, f=ISSUE, v=81P, p=32, X=sav01xih, Y=2024-11-18 14:43:05 Europe/Berlin, h=false, j=1, i=52, k=2024, M=49HBZ_DUE, s=0, d=8, V=soy49fel, L=reklamiert 12.06.2024 Lin/rekl. 21.10.2024 Lin/Harr. am 23.10.2024: ist rekl. /Lin/, a=23384881630006443, c=Zs-Auslage, r=ACQ, q=52.2024, No.1, W=2024-02-22 11:20:20 Europe/Berlin, u=X0081, w=X0081}, {H=22238169710006443, x=81P, f=ISSBD, v=81P, p=32, X=System, U=2003-04-28 12:59:00 Europe/Berlin, Y=2021-04-01 11:02:29 Europe/Berlin, h=false, e=00001, n=jurz.a340, P=16/a/r/1, j=1, i=12, k=1984, M=49HBZ_DUE, s=1, d=8, V=import, L=83, a=23238169700006443, t=8, c=jur z a 340, D=20030428, q=12.1984, W=2003-04-28 02:00:00 Europe/Berlin, u=X0081, w=X0081}, {H=22238169260006443, x=81P, f=ISSUE, v=81P, p=32, X=soy49fel, U=2024-06-24 11:12:39 Europe/Berlin, Y=2024-06-24 11:13:24 Europe/Berlin, h=false, j=2, i=51, k=2023, M=49HBZ_DUE, s=1, d=8, V=LEQUI102, L=reklamiert 12.06.2024 Lin/, a=23379951830006443, c=Zs-Auslage, q=51.2023, No.2, W=2023-10-19 11:17:44 Europe/Berlin, u=X0081, w=X0081}, {H=22238169260006443, x=81P, f=ISSUE, v=81P, p=32, X=soy49fel, U=2024-06-24 11:12:39 Europe/Berlin, Y=2024-06-24 11:13:24 Europe/Berlin, h=false, j=1, i=51, k=2023, M=49HBZ_DUE, s=1, d=8, V=LEQUI102, L=+ Nr.2 per E-Mail rekl. 02.11.2023 JB / Harr.: Rekl. wurde weitergel. 02.11.2023 JB / H.1-3 wurde von Harr. rekl. 08.02.2024 JB/reklamiert 12.06.2024 Lin/, a=23379951840006443, c=Zs-Auslage, q=51.2023, No.1, W=2023-10-19 11:17:44 Europe/Berlin, u=X0081, w=X0081}, {H=22238169710006443, x=81P, f=ISSBD, v=81P, p=32, X=System, U=2003-04-28 12:59:00 Europe/Berlin, Y=2021-04-01 11:02:29 Europe/Berlin, h=false, e=00001, n=jurz.a340, P=16/a/n/1, j=1, i=29, k=2001, M=49HBZ_DUE, s=1, d=8, V=import, a=23238169530006443, t=8, c=jur z a 340, D=20030428, q=29.2001, W=2003-04-28 02:00:00 Europe/Berlin, u=X0081, w=X0081}, 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a=23238169640006443, t=8, c=jur z a 340, D=20030428, q=18.1990, W=2003-04-28 02:00:00 Europe/Berlin, u=X0081, w=X0081}, {H=22238169710006443, x=81P, f=ISSBD, v=81P, p=32, X=System, U=2003-04-28 12:59:00 Europe/Berlin, Y=2021-04-01 11:02:29 Europe/Berlin, h=false, e=00001, n=jurz.a340, P=16/a/r/1, j=1, i=17, k=1989, M=49HBZ_DUE, s=1, d=8, V=import, a=23238169650006443, t=8, c=jur z a 340, D=20030428, q=17.1989, W=2003-04-28 02:00:00 Europe/Berlin, u=X0081, w=X0081}, {H=22238169710006443, x=81P, f=ISSBD, v=81P, p=32, X=HECKINA, U=2024-02-23 12:50:04 Europe/Berlin, Y=2024-03-20 12:50:04 Europe/Berlin, h=false, n=jurz.a340, G=1, i=50, k=2022, M=49HBZ_DUE, s=1, d=8, V=HECKINA, y=8, a=23384880510006443, t=8, c=jur z a 340, D=2024-03-20 11:49:59, q=50.2022, W=2022-04-04 02:00:00 Europe/Berlin, u=X0081, w=X0081}], GKT2 =[{a=Intellectual Property Law Association, g=USA, A=GND, B=GND-963965751, C=410}, {a=AIPLA, 4=[abku, http://d-nb.info/standards/elementset/gnd#abbreviatedNameForTheCorporateBody], w=r, i=Abkuerzung, e=Abkuerzung, A=GND, B=GND-963965751, C=410}, {a=AIPLA, g=American Intellectual Property Law Association, A=GND, B=GND-963965751, C=410}], GSI7 ={a=http://d-nb.info/gnd/10034623-6, 2=uri, A=GND, B=GND-963965751, C=024}, @innz=true, @context=http://lobid.org/resources/context.jsonld, id=http://lobid.org/resources/990119738560206441#!, type[]=[], medium[]=[], title=AIPLA quarterly journal, alternateGraphicRepresentation[]=[], almaMmsId=990119738560206441, urn[]=[], @urnLinks=[], @ISBN[]=[], isbn[]=[], issn[]=[08836078], ismn[]=[], doi[]=[], oclcNumber[]=[1368084189], zdbId=2106623-1, dnbId=024530395, stockNumber[]=[], @hbzId=HT013651660, deprecatedUri=http://lobid.org/resources/HT013651660#!, hbzId=HT013651660, @title=AIPLA quarterly journal, alternativeTitle[]=[], otherTitleInformation[]=[], edition[]=[], publication[]=[{startDate=1984, type[]=[PublicationEvent], location[]=[Arlington, Va.], publishedBy[]=[[Verlag nicht ermittelbar]], publicationHistory=12.1984 -, frequency[]=[], note[]=[]}], manufacture[]=[], @leaderPos07=s, titleKeyword[]=[], shortTitle[]=[], describedBy={id=http://lobid.org/resources/990119738560206441, label=Webseite der hbz-Ressource 990119738560206441, type[]=[BibliographicDescription], inDataset={id=http://lobid.org/resources/dataset#!, label=lobid-resources – Der hbz-Verbundkatalog als Linked Open Data}, resultOf={type[]=[CreateAction], endTime=2025-01-07T02:40:58, instrument={id=https://github.com/hbz/lobid-resources, type[]=[SoftwareApplication], label=Software lobid-resources}, object={id=https://lobid.org/marcxml/990119738560206441, dateCreated=2003-04-09, dateModified=2023-04-22, type[]=[DataFeedItem], label=hbz-Ressource 990119738560206441 im Exportformat MARC21 XML, inDataset={id=https://datahub.io/dataset/hbz_unioncatalog, label=hbz_unioncatalog}, sourceOrganization={id=http://lobid.org/organisations/DE-0061#!}, provider={id=http://lobid.org/organisations/DE-101#!, label=Deutsche Nationalbibliothek}, modifiedBy[]=[{id=http://lobid.org/organisations/DE-101#!, label=Deutsche Nationalbibliothek}]}}, license[]=[{id=http://creativecommons.org/publicdomain/zero/1.0, label=Creative Commons-Lizenz CC0 1.0 Universal}]}, @CreateTime=1, @initialCataloguingDate=20030409, sameAs[]=[{id=https://hub.culturegraph.org/resource/(DE-605)990119738560206441, label=Culturegraph Ressource}, {id=http://worldcat.org/oclc/1368084189, label=OCLC Ressource}, {id=http://ld.zdb-services.de/resource/2106623-1, label=ZDB-Ressource}, {id=https://d-nb.info/024530395, label=DNB-Ressource}], supplement[]=[], isPartOf[]=[], containedIn[]=[], primaryForm[]=[], secondaryForm[]=[], tableOfContents[]=[], description[]=[], seeAlso[]=[], fulltextOnline[]=[], related[]=[{id=http://lobid.org/resources/ZDB-2272708-5#!, note[]=[Online-Ausg.], label=AIPLA quarterly journal, issn[]=[], isbn[]=[]}], inCollection[]=[{id=https://nrw.digibib.net/search/hbzvk/, label=DigiBib hbz Verbundkatalog, type[]=[Collection]}, {id=http://lobid.org/organisations/DE-655#!, label=hbz - Hochschulbibliothekszentrum des Landes Nordrhein-Westfalen, Netzwerkzone, type[]=[Collection]}, {id=http://lobid.org/resources/HT014846970#!, label=Zeitschriftendatenbank (ZDB), type[]=[Collection]}], predecessor[]=[{label=APLA quarterly journal, id=http://lobid.org/resources/ZDB-187246-1#!, note[]=[Vorg.:]}], successor[]=[], exampleOfWork={label=, language[]=[]}, lang_temp=[], containsExampleOfWork[]=[], @language=[{id=eng, label=Englisch}, {id=eng, label=Englisch}], @008-lang=eng, language[]=[{id=http://id.loc.gov/vocabulary/iso639-2/eng, label=Englisch}], @300a=[], @300c=[], extent=, note[]=[], abstract[]=[], thesisInformation[]=[], bibliographicCitation=, license[]=[], langNote[]=[], natureOfContent[]=[{label=Zeitschrift, id=https://d-nb.info/gnd/4067488-5}], subject[]=[{notation=600, type[]=[Concept], source={label=DDC-Sachgruppen der ZDB, id=https://zeitschriftendatenbank.de/fileadmin/user_upload/ZDB/pdf/zdbformat/5080.pdf}, label=Technik}, {type[]=[Concept], source={label=Dewey-Dezimalklassifikation, id=https://d-nb.info/gnd/4149423-4}, label=Technik und Technologie, notation=600, version=sdnb}], @rvkNotations=990119738560206441} 2025-01-07 04:48:58 [WARN] org.metafacture.metafix.Metafix in Thread-15 - Error while executing Fix expression (at file:/home/sol/git/lobid-resources-alma/web/target/universal/stage/conf/alma/fix/subjects.fix, line 343): lookup("@rvkNotations","rvk",delete:"true") java.lang.IllegalArgumentException: Self-suppression not permitted at java.base/java.lang.Throwable.addSuppressed(Throwable.java:1054) at org.metafacture.metamorph.maps.FileMap.loadFile(FileMap.java:172) at java.base/java.util.ArrayList.forEach(ArrayList.java:1541) at org.metafacture.metamorph.maps.FileMap.loadFiles(FileMap.java:168) at org.metafacture.metamorph.maps.FileMap.init(FileMap.java:84) at org.metafacture.metamorph.maps.FileMap.get(FileMap.java:280) at org.metafacture.metamorph.maps.FileMap.get(FileMap.java:63) at org.metafacture.metafix.FixMethod$38.apply(FixMethod.java:520) at org.metafacture.metafix.RecordTransformer.lambda$processFunction$20(RecordTransformer.java:206) at org.metafacture.metafix.RecordTransformer.lambda$processFix$22(RecordTransformer.java:226) at org.metafacture.metafix.RecordTransformer.lambda$transform$1(RecordTransformer.java:125) at org.metafacture.metafix.RecordTransformer.tryRun(RecordTransformer.java:237) at org.metafacture.metafix.RecordTransformer.lambda$transform$2(RecordTransformer.java:125) at java.base/java.lang.Iterable.forEach(Iterable.java:75) at org.metafacture.metafix.RecordTransformer.transform(RecordTransformer.java:124) at org.metafacture.metafix.RecordTransformer.transform(RecordTransformer.java:116) at org.metafacture.metafix.FixMethod$1.apply(FixMethod.java:62) at org.metafacture.metafix.RecordTransformer.lambda$processFunction$20(RecordTransformer.java:206) at org.metafacture.metafix.RecordTransformer.lambda$processFix$22(RecordTransformer.java:226) at org.metafacture.metafix.RecordTransformer.lambda$transform$1(RecordTransformer.java:125) at org.metafacture.metafix.RecordTransformer.tryRun(RecordTransformer.java:237) at org.metafacture.metafix.RecordTransformer.lambda$transform$2(RecordTransformer.java:125) at java.base/java.lang.Iterable.forEach(Iterable.java:75) at org.metafacture.metafix.RecordTransformer.transform(RecordTransformer.java:124) at org.metafacture.metafix.Metafix.endRecord(Metafix.java:247) at org.metafacture.biblio.marc21.MarcXmlHandler.endElement(MarcXmlHandler.java:132) at org.apache.xerces.parsers.AbstractSAXParser.endElement(Unknown Source) at org.apache.xerces.impl.XMLNSDocumentScannerImpl.scanEndElement(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XMLParser.parse(Unknown Source) at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source) at org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at org.metafacture.xml.XmlDecoder.process(XmlDecoder.java:73) at org.metafacture.xml.XmlDecoder.process(XmlDecoder.java:44) at org.metafacture.strings.StringReader.process(StringReader.java:48) at org.metafacture.strings.StringReader.process(StringReader.java:34) at org.metafacture.flowcontrol.ObjectPipeDecoupler$Feeder.run(ObjectPipeDecoupler.java:175) at java.base/java.lang.Thread.run(Thread.java:829) Caused by: java.lang.OutOfMemoryError: Java heap space

Resulted in an unsuccessful update through an OutOfMemoryError.
Appeared at org.metafacture.metamorph.maps.FileMap.loadFile(FileMap.java:172). This also indicates that the map is loaded every time when the map is looked up? (<- to be checked)

Do you have an idea how to prevent this via fix Tobias?

[dr0i]

I've retriggerd the update, now it has run smoothly. Found in the old logs some network problems (ES nodes not found), will investigate if that has anything to do with OutOfMemoryError: Java heap space .

[TobiasNx]

To be honest I have no clue. The Map is added in maps.fix which is called in a do once bind. It should not be called every time but only once and loaded into the memory.
The RVK Map is a big file. Could file size alone be a problem?

[dr0i]

Could file size alone be a problem?

Unlikely (it's only 260 MB ). Also, consecutive indexing don't fail.
Closed as not reproducible.

[dr0i]

It happened again. More info at our internal wiki.

[TobiasNx]

2025-01-27 04:03:53 [WARN] org.metafacture.metafix.Metafix in Thread-16 - Error while execu
ting Fix expression (at file:/home/sol/git/lobid-resources-alma/web/target/universal/stage/
conf/alma/fix/subjects.fix, line 343): lookup("@rvkNotations","rvk",delete:"true")

It is the rvk notation lookup that creates trouble.

[dr0i]

Interestingly, while working to find out why rpb has a memory problem:
For-looping the ETL.main() processes at https://github.com/hbz/rpb/blob/main/test/rpb/EtlTest.java#L33 resulted at loop 62 on my laptop in:

java.lang.OutOfMemoryError: GC overhead limit exceeded
at java.util.Arrays.copyOfRange(Arrays.java:3664)
at java.lang.String.(String.java:207)
at java.io.BufferedReader.readLine(BufferedReader.java:356)
at java.io.BufferedReader.readLine(BufferedReader.java:389)
at org.metafacture.metamorph.maps.FileMap.loadFile(FileMap.java:181)

no Fix lookup but called at org.metafacture.metafix.FixMethod$38.apply(FixMethod.java:519).