teaching-genomics.md

title
Genomics

Genomics 2014/2015

This Genomics course is being offered in the FU Master's Program in Bioinformatics (CUB848). The lectures will take place on Tuesdays on 14-16h and are accompanied by recitals (Übungen) on Thursday from 8-10h (cum multo tempore, i.e., we will begin punctually at 8:30h). Lecture slides and handouts for the recitals will be made available from this webpage.

Schedule 2016

• Lecture 24 (Jan 26, 2016). Chromosomal Conformation Capture (CCC) technologies.

Lecture Slides

• Lecture 1: NGS methodology.
• Lecture 2: Genome assembly (1).
• Lecture 3: Genome assembly (2).
• Lecture 4: Read mapping (1).
• Lecture 5: Read mapping (2).
• Lecture 6: Variant calling (1).
• Lecture 7: Variant calling (2).
• Lecture 8: WGS and structural variation (1).
• Lecture 9: WGS and structural variation (2).
• Lecture 10: RNA-seq (1).
• Lecture 11: RNA-seq (2): January 5, 2016.
• Lecture 12: ChIP-seq (1).
• Lecture 13: ChIP-seq (2).
• Lecture 14: CCC.

Exercises

• Exercise 1 (NGS Methodology).
• Exercise 2 (Genome Assembly).
• Exercise X (ChIP-seq, PCA).

Additional Material

• Practical exercise: G/C content and Read Depth in WGS CNV analysis.

Final Exam

• Final exam (1st round); date: Feb 25, 2016; time: 14:00; place: T9 Gr.HS
• Final exam (2nd round); date: Apr 14, 2016; time: 14:15; place: T9 Gr.HS