Code and analysis for genome-wide analysis of eSTRs in the GTEx cohort
Folders contain the following:
figures: Jupyter notebooks for generating figuresstr-regression: scripts for eSTR regression analysis (on AWS)snp-regression: scripts for eSNP regression analysis (on AWS)anova: scripts for running eSTR+eSNP ANOVAcaviar: scripts for running eSTR+eSNP CAVIARmaster: scripts for collecting all eSTR summary statisticsmashr: scripts for performing mashR analysishomer-plots: scripts for generating ChIP-seq histogramsgwas: scripts for overlapping eSTRs with GWAS hits