-
Notifications
You must be signed in to change notification settings - Fork 51
/
Copy pathapstest.txt
87 lines (76 loc) · 3.94 KB
/
apstest.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8
[4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] treemap_2.4-2 mmod_1.3.3 hierfstat_0.5-7 remotes_2.2.0 viridisLite_0.3.0
[6] vegan_2.5-7 permute_0.9-5 vcfR_1.12.0 reshape2_1.4.4 RColorBrewer_1.1-2
[11] poppr_2.8.7 pinfsc50_1.2.0 pegas_0.14 magrittr_2.0.1 lattice_0.20-41
[16] knitr_1.30 igraph_1.2.6 ggplot2_3.3.3 dplyr_1.0.3 cowplot_1.1.1
[21] ape_5.4-1 adegenet_2.1.3 ade4_1.7-16 devtools_2.3.2 usethis_2.0.0
[26] bookdown_0.21
loaded via a namespace (and not attached):
[1] colorspace_2.0-0 seqinr_4.2-5 deldir_0.2-9 ellipsis_0.3.1 class_7.3-17
[6] rprojroot_2.0.2 fs_1.5.0 rstudioapi_0.13 fansi_0.4.2 codetools_0.2-18
[11] splines_4.0.3 memuse_4.1-0 pkgload_1.1.0 jsonlite_1.7.2 gridBase_0.4-7
[16] cluster_2.1.0 shiny_1.5.0 compiler_4.0.3 httr_1.4.2 assertthat_0.2.1
[21] Matrix_1.3-2 fastmap_1.0.1 cli_2.2.0 later_1.1.0.1 htmltools_0.5.1.1
[26] prettyunits_1.1.1 tools_4.0.3 coda_0.19-4 gtable_0.3.0 glue_1.4.2
[31] gmodels_2.18.1 fastmatch_1.1-0 tinytex_0.29 Rcpp_1.0.6 raster_3.4-5
[36] vctrs_0.3.6 spdep_1.1-5 gdata_2.18.0 nlme_3.1-151 xfun_0.20
[41] stringr_1.4.0 ps_1.5.0 testthat_3.0.1 mime_0.9 lifecycle_0.2.0
[46] phangorn_2.5.5 gtools_3.8.2 LearnBayes_2.15.1 MASS_7.3-53 scales_1.1.1
[51] hms_1.0.0 promises_1.1.1 parallel_4.0.3 expm_0.999-6 yaml_2.2.1
[56] curl_4.3 memoise_1.1.0 stringi_1.5.3 desc_1.2.0 e1071_1.7-4
[61] boot_1.3-25 pkgbuild_1.2.0 spData_0.3.8 rlang_0.4.10 pkgconfig_2.0.3
[66] polysat_1.7-4 evaluate_0.14 purrr_0.3.4 sf_0.9-7 processx_3.4.5
[71] tidyselect_1.1.0 plyr_1.8.6 R6_2.5.0 generics_0.1.0 DBI_1.1.1
[76] pillar_1.4.7 withr_2.4.0 mgcv_1.8-33 units_0.6-7 sp_1.4-5
[81] tibble_3.0.5 crayon_1.3.4 KernSmooth_2.23-18 rmarkdown_2.6 progress_1.2.2
[86] grid_4.0.3 data.table_1.13.6 callr_3.5.1 digest_0.6.27 classInt_0.4-3
[91] xtable_1.8-4 httpuv_1.5.5 munsell_0.5.0 quadprog_1.5-8 sessioninfo_1.1.1
Testing to see if you are ready for the Population Genomics in R Workshop!
adegenet is installed.
ape is installed.
cowplot is installed.
dplyr is installed.
ggplot2 is installed.
hierfstat is installed.
igraph is installed.
knitr is installed.
lattice is installed.
magrittr is installed.
mmod is installed.
pegas is installed.
pinfsc50 is installed.
poppr is installed.
RColorBrewer is installed.
reshape2 is installed.
treemap is installed.
vcfR is installed.
vegan is installed.
viridisLite is installed.
Testing to see if you can load your data.
***** Object of Class vcfR *****
18 samples
1 CHROMs
2,190 variants
Object size: 2.9 Mb
0 percent missing data
***** ***** *****
***** Object of Class vcfR *****
94 samples
321 CHROMs
615 variants
Object size: 3.1 Mb
4.589 percent missing data
***** ***** *****