NAMESPACE

# Generated by roxygen2: do not edit by hand

export(Clinical)
export(GMS)
export(Lolliplot)
export(MutSpectra)
export(MutationAnnotationFormat)
export(Rainfall)
export(TvTi)
export(VEP)
export(Waterfall)
export(cnFreq)
export(cnSpec)
export(cnView)
export(compIdent)
export(covBars)
export(genCov)
export(geneViz)
export(ideoView)
export(lohSpec)
export(lohView)
export(lolliplot)
export(waterfall)
exportClasses(Clinical)
exportClasses(GMS)
exportClasses(Lolliplot)
exportClasses(MutSpectra)
exportClasses(MutationAnnotationFormat)
exportClasses(Rainfall)
exportClasses(VEP)
exportClasses(Waterfall)
exportMethods(drawPlot)
exportMethods(getData)
exportMethods(getDescription)
exportMethods(getGrob)
exportMethods(getHeader)
exportMethods(getMeta)
exportMethods(getMutation)
exportMethods(getPath)
exportMethods(getPosition)
exportMethods(getSample)
exportMethods(getVersion)
exportMethods(writeData)
import(data.table)
import(ggplot2)
import(methods)
importClassesFrom(data.table,data.table)
importFrom(AnnotationDbi,select)
importFrom(BSgenome,available.genomes)
importFrom(BSgenome,installed.genomes)
importFrom(BiocGenerics,unlist)
importFrom(Biostrings,DNAStringSet)
importFrom(Biostrings,alphabetFrequency)
importFrom(Biostrings,getSeq)
importFrom(DBI,dbConnect)
importFrom(DBI,dbDisconnect)
importFrom(DBI,dbGetQuery)
importFrom(GenomeInfoDb,seqlengths)
importFrom(GenomeInfoDb,seqlevels)
importFrom(GenomeInfoDb,seqnames)
importFrom(GenomicFeatures,transcriptsByOverlaps)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,disjoin)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,gaps)
importFrom(GenomicRanges,intersect)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,reduce)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,start)
importFrom(GenomicRanges,strand)
importFrom(GenomicRanges,values)
importFrom(IRanges,IRanges)
importFrom(IRanges,extractList)
importFrom(IRanges,ranges)
importFrom(IRanges,relist)
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,getSeq)
importFrom(Rsamtools,pileup)
importFrom(Rsamtools,scanBam)
importFrom(VariantAnnotation,predictCoding)
importFrom(biomaRt,getBM)
importFrom(biomaRt,listDatasets)
importFrom(biomaRt,useDataset)
importFrom(biomaRt,useMart)
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,dcast)
importFrom(data.table,fread)
importFrom(data.table,fwrite)
importFrom(data.table,is.data.table)
importFrom(data.table,melt)
importFrom(data.table,rbindlist)
importFrom(data.table,setDT)
importFrom(ggplot2,ggplotGrob)
importFrom(grDevices,colors)
importFrom(grid,grid.draw)
importFrom(grid,grid.newpage)
importFrom(grid,nullGrob)
importFrom(grid,unit.pmax)
importFrom(gridExtra,arrangeGrob)
importFrom(gridExtra,grid.arrange)
importFrom(gtable,gtable)
importFrom(gtable,gtable_add_grob)
importFrom(gtable,gtable_add_rows)
importFrom(gtools,mixedsort)
importFrom(plyr,adply)
importFrom(plyr,count)
importFrom(plyr,ldply)
importFrom(plyr,mapvalues)
importFrom(plyr,rbind.fill)
importFrom(scales,log10_trans)
importFrom(scales,rescale)
importFrom(scales,squish)
importFrom(stats,aggregate)
importFrom(stats,na.omit)
importFrom(stats,setNames)
importFrom(utils,read.delim)
importFrom(viridis,scale_fill_viridis)
importFrom(viridis,viridis)