🏥 Safe Output Health Report - November 8, 2025 #3471
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Over the past 24 hours, I analyzed 87 workflow runs to assess the health of safe output jobs in our agentic workflows. The analysis focused exclusively on safe output job failures (create_discussion, create_issue, add_comment, create_pull_request, etc.) and identified 7 failures across 43 total safe output job executions.
Overall, safe output jobs maintained an 83.72% success rate, with most failures clustering around two main issues: GitHub App workflow permissions and token permission scopes.
Full Report Details
Executive Summary
Safe Output Job Statistics
Error Clusters
Cluster 1: GitHub App Permissions - Workflow Write Access 🔴
Sample Error:
Root Cause:
When agents modify workflow files (.md files in
.github/workflows/), the safe output system creates a pull request that includes both the modified .md files and the compiled .lock.yml files. GitHub requires theworkflowspermission on the GitHub App token to push changes that touch .lock.yml files in the.github/workflows/directory.The current GitHub App token configuration lacks this permission, causing all PR creation attempts involving workflow files to fail.
Impact:
Affected Runs:
Cluster 2: Issue Assignment - Personal Access Token Permissions⚠️
Sample Error:
Root Cause:
The Duplicate Code Detector workflow attempts to assign created issues to
@copilotusing a personal access token. However, assigning issues to GitHub Copilot requires organization-level permissions that the current token lacks. ThereplaceActorsForAssignableGraphQL mutation requires elevated permissions beyond what a standard PAT provides.Impact:
Affected Runs:
Cluster 3: Missing File - staged_preview.cjs⚠️
Sample Error:
Root Cause:
The Changeset Generator workflow's push_to_pull_request_branch safe output job attempts to require a Node.js module
staged_preview.cjsthat doesn't exist in the repository. This appears to be leftover code or a reference to a file that was removed or renamed.Impact:
Affected Runs:
Root Cause Analysis
Permission-Related Issues (85% of failures)
The majority of safe output job failures (6 out of 7) stem from insufficient permissions:
GitHub App Token Scope (Cluster 1): The GitHub App token used by agentic workflows lacks the
workflowspermission, preventing any push operations that modify workflow files. This is a critical blocker for workflow optimization agents.PAT Scope Limitation (Cluster 2): Personal access tokens used for issue assignment lack organization-level permissions required to assign issues to GitHub Copilot bot accounts.
Both issues indicate a need for permission scope review and adjustment in the workflow configuration.
Code Quality Issues (15% of failures)
One failure (Cluster 3) resulted from code referencing a non-existent file. This suggests:
Recommendations
Critical Issues (Immediate Action Required)
1. Grant Workflows Permission to GitHub App Token
workflowspermission scopeworkflows: writepermission2. Remove or Fix
@copilotAssignment Logic@copilotBug Fixes Required
3. Fix staged_preview.cjs Reference in Changeset Generator
.github/workflows/changeset.md- push_to_pull_request_branch safe output configurationstaged_preview.cjsProcess Improvements
4. Implement Pre-Flight Permission Checks
5. Add File Existence Validation
6. Separate Workflow File Updates from Regular PR Creation
Work Item Plans
Work Item 1: Grant Workflows Permission to GitHub App
workflows: writepermission, enabling agents to create pull requests that modify workflow filesworkflows: writepermission enabledWork Item 2: Fix Issue Assignment Logic in Duplicate Code Detector
Type: Bug Fix / Enhancement
Priority: High
Description: Remove or update the
@copilotissue assignment logic to use a supported assignment methodAcceptance Criteria:
Technical Approach:
Option A (Recommended): Remove assignment step
.github/workflows/duplicate-code-detector.mdOption B: Assign to human users
@copilotwith a valid GitHub username or teamEstimated Effort: Small (30 minutes implementation + 15 minutes testing)
Dependencies: None
Work Item 3: Fix staged_preview.cjs Reference in Changeset Generator
staged_preview.cjsfile in the push_to_pull_request_branch safe output jobWork Item 4: Add Permission Pre-Flight Checks to Safe Output Jobs
workflowspermission before pushing workflow filesWork Item 5: Improve Safe Output Job Error Handling
Historical Context
This is the first comprehensive safe output health audit. Future audits will track:
Metrics and KPIs
Next Steps
workflowspermission to GitHub App (Critical - Work Item 1)@copilotassignment in Duplicate Code Detector (High - Work Item 2)References:
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