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NAMESPACE
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99 lines (98 loc) · 2.81 KB
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# Generated by roxygen2: do not edit by hand
export(as_se)
export(list_panels)
export(olink_boxplot)
export(olink_heatmap)
export(olink_limma)
export(olink_pca)
export(olink_volcano)
export(overview_heatmap)
export(read_npx)
export(webgestalt_prep)
importFrom(OlinkAnalyze,olink_normalization)
importFrom(OlinkAnalyze,read_NPX)
importFrom(PCAtools,biplot)
importFrom(PCAtools,eigencorplot)
importFrom(PCAtools,findElbowPoint)
importFrom(PCAtools,getComponents)
importFrom(PCAtools,pairsplot)
importFrom(PCAtools,parallelPCA)
importFrom(PCAtools,pca)
importFrom(PCAtools,plotloadings)
importFrom(PCAtools,screeplot)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(cowplot,theme_cowplot)
importFrom(dplyr,across)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,case_when)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,if_else)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,near)
importFrom(dplyr,pull)
importFrom(dplyr,recode)
importFrom(dplyr,rename_with)
importFrom(dplyr,right_join)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,ungroup)
importFrom(fs,dir_create)
importFrom(fs,path)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_jitter)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggrepel,geom_label_repel)
importFrom(ggsci,scale_fill_npg)
importFrom(grDevices,colorRampPalette)
importFrom(limma,contrasts.fit)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,makeContrasts)
importFrom(limma,topTable)
importFrom(magrittr,"%>%")
importFrom(matrixStats,rowSds)
importFrom(pheatmap,pheatmap)
importFrom(purrr,map)
importFrom(purrr,map_dfr)
importFrom(purrr,reduce)
importFrom(readr,write_lines)
importFrom(readr,write_tsv)
importFrom(readxl,read_excel)
importFrom(reshape2,acast)
importFrom(rlang,.data)
importFrom(rlang,has_name)
importFrom(scater,uniquifyFeatureNames)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stringr,str_c)
importFrom(stringr,str_replace)
importFrom(stringr,str_split)
importFrom(stringr,str_trim)
importFrom(tibble,as_tibble)
importFrom(tibble,tibble)
importFrom(tidyr,pivot_longer)
importFrom(tidyselect,all_of)
importFrom(tidyselect,contains)
importFrom(tidyselect,ends_with)
importFrom(utils,head)
importMethodsFrom(SummarizedExperiment,assay)
importMethodsFrom(SummarizedExperiment,colData)
importMethodsFrom(SummarizedExperiment,rowData)