From c79d7bdbabd1114e20ca26ae3c7c0426f64255a4 Mon Sep 17 00:00:00 2001
From: Joe Vieira <joe.vieira@gmail.com>
Date: Tue, 12 Sep 2023 10:15:05 -0400
Subject: [PATCH] clarify duplicate comments

---
 src/main/scala/com/fulcrumgenomics/umi/GroupReadsByUmi.scala | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/main/scala/com/fulcrumgenomics/umi/GroupReadsByUmi.scala b/src/main/scala/com/fulcrumgenomics/umi/GroupReadsByUmi.scala
index 90c9fba18..44cc47541 100644
--- a/src/main/scala/com/fulcrumgenomics/umi/GroupReadsByUmi.scala
+++ b/src/main/scala/com/fulcrumgenomics/umi/GroupReadsByUmi.scala
@@ -632,7 +632,7 @@ class GroupReadsByUmi
       // Then group the records in the right order (assigned tag, read name, r1, r2)
       val templatesByMi = templates.groupBy { t => t.r1.get.apply[String](this.assignTag) }
 
-      // If marking duplicate, assign bitflag to non-duplicate
+      // If marking duplicates, assign bitflag to all duplicate reads
       if (this.markDup) {
         templatesByMi.values.foreach(t => assignRepReadToGroup(t))
       }