Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Output euclidian distances before transformation in run_affine function #89

Open
nrepina opened this issue Sep 6, 2023 · 0 comments
Open

Output euclidian distances before transformation in run_affine function #89

nrepina opened this issue Sep 6, 2023 · 0 comments
Assignees
@nrepina
Labels
enhancement New feature or request

Comments

@nrepina
Copy link
Collaborator

nrepina commented Sep 6, 2023

Update run_affine function in NucleiLinkingFunctions to also output euclidian distances between matched nuclei before affine transformation. This allows quality control that the distance was minimized after transformation.

See cost_matrix[row_indices, col_indices] in function (euclidian_distance_pix_fixed_to_affine)
@nrepina nrepina added the enhancement New feature or request label Sep 6, 2023
@nrepina nrepina self-assigned this Sep 6, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@nrepina nrepina

Labels
enhancement New feature or request
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@nrepina