Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Weeder2: bioconda updates break tool #69

Open
pjbriggs opened this issue Sep 26, 2018 · 0 comments
Open

Weeder2: bioconda updates break tool #69

pjbriggs opened this issue Sep 26, 2018 · 0 comments
Labels
bug tool/weeder2

Comments

@pjbriggs
Copy link
Member

pjbriggs commented Sep 26, 2018 •
edited
Loading

Updates to the bioconda weeder package break the weeder2 tool:

  • Egregious bug in bioconda weeder2 Python wrapper caused an infinite recursion which ultimately consumed all memory on the host running the tool (NB fixed by Weeder2 fix wrapper script bioconda/bioconda-recipes#11039)
  • Wrapper script attempts to enables running weeder2 from arbitrary location by moving to the installation directory, but this breaks the tool if user-defined frequency files are specified.
@pjbriggs pjbriggs changed the title Weeder2@ Weeder2: bioconda updates break tool Sep 26, 2018
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
bug tool/weeder2
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@pjbriggs