planemo-ci-tests.yml

# This workflow will run the Planemo test scripts for the tools
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

name: planemo-ci-tests

on: [push, pull_request]

jobs:
  run-ci-tests:
    # Use 'runs-on: ubuntu-20.04' if you need Python 3.6
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        # Define the tools and Galaxy versions to test
        galaxy-tool:
          - pal_finder
          - weeder2
          - rnachipintegrator
          - macs21
          - motif_tools
        galaxy-version:
          - "20.05"
    steps:
      - name: Checkout repository
        uses: actions/checkout@v2
      - name: Set up Python 3.8
        uses: actions/setup-python@v2
        with:
          python-version: 3.8
      - name: Install Virtualenv
        run: sudo apt-get install python3-virtualenv
      - name: Install Planemo 0.75
        run: python -m pip install planemo==0.75.8
      - name: Checkout Galaxy version ${{ matrix.galaxy-version }}
        run: |
          git clone https://github.com/galaxyproject/galaxy/ \
          -b release_${{ matrix.galaxy-version }} \
          galaxy_${{ matrix.galaxy-version }}
      - name: Run Planemo tests for ${{ matrix.galaxy-tool }}
        run: |
          ./tools/${{ matrix.galaxy-tool }}/run_planemo_tests.sh \
          --galaxy_root galaxy_${{ matrix.galaxy-version }}