Process completed with exit code 1.

Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v1. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/

Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v1. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/

Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v1. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

No files were found with the provided path: check. No artifacts will be uploaded.

No files were found with the provided path: check. No artifacts will be uploaded.

unable to access index for repository https://www.bioconductor.org/packages/3.21/data/annotation/bin/windows/contrib/4.5:

unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/windows/contrib/4.5:

unable to access index for repository https://www.bioconductor.org/packages/3.21/books/bin/windows/contrib/4.5:

unable to access index for repository https://www.bioconductor.org/packages/3.21/data/annotation/bin/windows/contrib/4.5:

unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/windows/contrib/4.5:

unable to access index for repository https://www.bioconductor.org/packages/3.21/books/bin/windows/contrib/4.5:

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

unable to access index for repository https://www.bioconductor.org/packages/3.21/data/annotation/bin/windows/contrib/4.5:

unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/windows/contrib/4.5:

unable to access index for repository https://www.bioconductor.org/packages/3.21/books/bin/windows/contrib/4.5:

Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v1. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/

Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.

Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2, actions/cache@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://www.bioconductor.org/packages/3.21/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://www.bioconductor.org/packages/3.21/books/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://www.bioconductor.org/packages/3.21/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://www.bioconductor.org/packages/3.21/books/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

unable to access index for repository https://www.bioconductor.org/packages/3.21/data/annotation/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://www.bioconductor.org/packages/3.21/books/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:

Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]

Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]

Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]

Unused dummy argument ‘timed’ at (1) [-Wunused-dummy-argument]

Unused dummy argument ‘timed’ at (1) [-Wunused-dummy-argument]

Unused dummy argument ‘timed’ at (1) [-Wunused-dummy-argument]

unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:

unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:

cairo 1.18.2 is already installed and up-to-date. To reinstall 1.18.2, run: brew reinstall cairo

macOS's Gatekeeper has been disabled for this Cask

harfbuzz 10.1.0 is already installed and up-to-date. To reinstall 10.1.0, run: brew reinstall harfbuzz