-
Notifications
You must be signed in to change notification settings - Fork 47
/
Copy pathfabm-jrc-med_ergom.yaml
78 lines (78 loc) · 5.99 KB
/
fabm-jrc-med_ergom.yaml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
instances:
med_ergom:
model: jrc/med_ergom
parameters:
env_type: marine # Define environment type, either fresh or marine, default = marine
wdz: 4.5 # Detritus sinking velocity (m/d), default = 4.5
wpz: -0.5 # Diatoms sinking velocity (m/d), default = -0.5
wfz: 0.0 # Zooplankton sinking velocity (m/d), default = 0.0
wbz: 0.1 # Cyanobacteria sinking velocity (positive) (m/d), default = 0.1
wpo4: -1.0 # P-Fe in water sinking velocity (m/d), default = -1.0
sfl_po: 0.0015 # constant surface phosphate flux (mmol p/m2/d), default = 0.0015
sfl_nn: 0.083 # constant surface nitrate flux (mmol n/m2/d), default = 0.083
sfl_aa: 0.06 # constant surface ammonium flux (mmol n/m2/d), default = 0.06
nb: 0.01 # Phytoplankton excretion rate (pl -> aa) (1/d), default = 0.01
deltao: 0.02 # Phytoplankton mortality rate (pl -> dd) (1/d), default = 0.02
nue: 0.01 # Zooplankton respiration rate (zz -> aa) (m3/d/mmol n), default = 0.01
sigma_b: 0.03 # Zooplankton mortality rate (zz -> dd) (m3/d/mmol n), default = 0.03
dn: 0.003 # Detritus mineralization rate (dd -> aa) (1/d), default = 0.003
dn_sed: 0.002 # Sediment mineralization rate (fl -> aa) (1/d), default = 0.002
rp0: 1.3 # Diatoms uptake rate (1/d), default = 1.3
rf0: 0.4 # Flagellates uptake rate (1/d), default = 0.4
rb0: 0.75 # Cyanobacteria uptake rate (1/d), default = 0.75
cyanotll: 13.5 # Cyanobacteria lower temperature limit (deg C), default = 13.5
cyanosll: 1.0 # Cyanobacteria lower salinity limit (PSU), default = 1.0
cyanosul: 10.0 # Cyanobacteria upper salinity limit (PSU), default = 10.0
flagtll: 100.0 # Flagellates half-saturation temp, squared (deg C), default = 100.0
alphap: 0.25 # Half-saturation const, diatoms (mmol n/m3), default = 0.25
alphaf: 0.1 # Half-saturation const, flagellates (mmol n/m3), default = 0.1
alphab: 0.4 # Half-saturation const, cyanobacteria (mmol n/m3), default = 0.4
Yc_diat: 6.25 # Carbon to Chla ratio (micro-mol : mg), diatoms (umol C/mg Chla), default = 6.25
Yc_flag: 6.25 # Carbon to Chla ratio (micro-mol : mg), flagellates (umol C/mg Chla), default = 6.25
Yc_cyan: 6.25 # Carbon to Chla ratio (micro-mol : mg), cyanobacteria (umol C/mg Chla), default = 6.25
iv: 1.2 # Ivlev constant, quadratic (1/(mmol n/m3)3), default = 1.2
graz: 0.5 # Zooplankton grazing rate (1/d), default = 0.5
toptz: 20.0 # Optimal temperature for grazing (deg C), default = 20.0
zcl1: 50.0 # Zooplankton closure parameter (-), default = 50.0
p0: 0.001 # Diatoms background value (mmol n/m3), default = 0.001
f0: 0.001 # Flagellates backgorund value (mmol n/m3), default = 0.001
b0: 0.001 # Cyanobacteria background value (mmol n/m3), default = 0.001
z0: 0.001 # Zooplankton background value (mmol n/m3), default = 0.001
imin_di: 35.0 # minimal optimal light radiation, diatoms (W/m2), default = 35.0
imin_fla: 50.0 # minimal optimal light radiation, flagellates (W/m2), default = 50.0
imin_cya: 50.0 # minimal optimal light radiation, cyanobacterias (W/m2), default = 50.0
kc: 99.0 # attenuation constant for self-shading effect (m2/mmol n), default = 0.03
q10_rec: 0.15 # sediment recycling q10 rule factor (-), default = 0.15
ade_r0: 0.1 # chemoautolithotrophic denitrification rate (1/d), default = 0.1
alphaade: 1.0 # half-saturation constant for ade (mmol n/m3), default = 1.0
q10_recs: 0.175 # sediment recycling q10 rule factor (-), default = 0.175
rfr: 0.0625 # Redfield ratio P/N (-), default = 0.0625
rfc: 6.625 # Redfield ratio C/N (-), default = 6.625
sedrate: 2.25 # Detritus sedimentation rate (m/d), default = 2.25
erorate: 6.0 # Sediment erosion rate (m/d), default = 6.0
sedratepo4: 0.5 # P-Fe sedimentation rate (m/d), default = 0.5
eroratepo4: 6.0 # P-Fe erosion rate (m/d), default = 6.0
po4ret: 0.18 # Phosphate retention rate, oxic sediments (-), default = 0.18
pburialrate: 0.007 # Phopshate burial rate (-), default = 0.007
fl_burialrate: 0.001 # Sediment burial rate (-), default = 0.001
pliberationrate: 0.1 # Phosphate liberation rate, anoxic sediments (-), default = 0.1
ipo4th: 100.0 # Increased phosphate burial threshold (mmol p/m2), default = 100.0
maxsed: 1000.0 # Maximum active sediment concentration (-), default = 1000.0
br0: 0.03 # Bioresuspension rate (1/d), default = 0.03
fds: 0.7 # Sediment denitrification rate, oxic (-), default = 0.7
pvel: 5.0 # Piston velocity (m/d), default = 5.0
newflux: 2 # Oxygen flux type (-), default = 2
tau_crit: 0.07 # Critical shear stress (N/m2), default = 0.07
initialization:
pp: 0.001 # diatoms (mmol n/m**3)
ff: 0.001 # flagellates (mmol n/m**3)
bb: 0.001 # cyanobacteria (mmol n/m**3)
zz: 0.001 # zooplankton (mmol n/m**3)
dd: 0.01 # detritus (mmol n/m**3)
aa: 0.001 # ammonium (mmol n/m**3)
nn: 0.0001 # nitrate (mmol n/m**3)
po: 0.0001 # phosphate (mmol p/m**3)
o2: 300.0 # oxygen (mmol o2/m**3)
fl: 100.0 # fluff (mmol n/m**2)
pb: 0.001 # PFe_s (mmol p/m**2)
pw: 0.001 # PFe_w (mmol p/m**3)