diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 73d9287..a1df3c1 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -1,11 +1,12 @@ name: CI-COVER-VERSIONS on: -# push: -# paths: -# - '**.py' -# - '.github/workflows/**' -# - '!dev/**' +# push: +# paths: +# - '**.py' +# - '.github/workflows/**' +# - '!dev/**' +# - '**.lock' pull_request: branches: [ master ] workflow_dispatch: @@ -34,7 +35,8 @@ jobs: python-version: ${{ matrix.python-version }} - name: Build the stack - run: docker compose up -d mysql postgres trino clickhouse vertica + # The vertica docker image is 404 + run: docker compose up -d mysql postgres trino clickhouse dremio #vertica - name: Install Poetry run: pip install poetry @@ -47,9 +49,11 @@ jobs: # PRESTO_URI: 'presto://presto@127.0.0.1/postgresql/public' TRINO_URI: 'trino://postgres@127.0.0.1:8081/postgresql/public' CLICKHOUSE_URI: 'clickhouse://clickhouse:Password1@localhost:9000/clickhouse' - VERTICA_URI: 'vertica://vertica:Password1@localhost:5433/vertica' + # The vertica docker image is 404 + #VERTICA_URI: 'vertica://vertica:Password1@localhost:5433/vertica' SNOWFLAKE_URI: '${{ secrets.SNOWFLAKE_URI }}' REDSHIFT_URI: '${{ secrets.REDSHIFT_URI }}' + DREMIO_URI: 'dremio://dremio:dremio123@localhost:32010/$scratch?UseEncryption=false' run: | chmod +x tests/waiting_for_stack_up.sh ./tests/waiting_for_stack_up.sh && TEST_ACROSS_ALL_DBS=0 poetry run unittest-parallel -j 16 diff --git a/.github/workflows/ci_full.yml b/.github/workflows/ci_full.yml index e1cd2be..649e7e1 100644 --- a/.github/workflows/ci_full.yml +++ b/.github/workflows/ci_full.yml @@ -1,11 +1,12 @@ name: CI-COVER-DATABASES on: -# push: +# push: # paths: # - '**.py' # - '.github/workflows/**' # - '!dev/**' +# - '**.lock' pull_request: branches: [ master ] workflow_dispatch: @@ -30,7 +31,8 @@ jobs: python-version: ${{ matrix.python-version }} - name: Build the stack - run: docker compose up -d mysql postgres trino clickhouse vertica + # The vertica docker image is 404 + run: docker compose up -d mysql postgres trino clickhouse dremio #vertica - name: Install Poetry run: pip install poetry @@ -43,9 +45,11 @@ jobs: # PRESTO_URI: 'presto://presto@127.0.0.1/postgresql/public' TRINO_URI: 'trino://postgres@127.0.0.1:8081/postgresql/public' CLICKHOUSE_URI: 'clickhouse://clickhouse:Password1@localhost:9000/clickhouse' - VERTICA_URI: 'vertica://vertica:Password1@localhost:5433/vertica' + # The vertica docker image is 404 + #VERTICA_URI: 'vertica://vertica:Password1@localhost:5433/vertica' SNOWFLAKE_URI: '${{ secrets.SNOWFLAKE_URI }}' REDSHIFT_URI: '${{ secrets.REDSHIFT_URI }}' + DREMIO_URI: 'dremio://dremio:dremio123@localhost:32010/$scratch?UseEncryption=false' run: | chmod +x tests/waiting_for_stack_up.sh ./tests/waiting_for_stack_up.sh && poetry run unittest-parallel -j 16 diff --git a/README.md b/README.md index acdb6d2..0ed752b 100644 --- a/README.md +++ b/README.md @@ -42,6 +42,7 @@ _Databases we fully support_: - Vertica - DuckDB >=0.6 - SQLite (coming soon) +- Dremio 💻 **Built-in SQL client**: Connect to any of the supported databases with just one line. diff --git a/docker-compose.yml b/docker-compose.yml index b5d7ae3..1012f54 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -99,31 +99,52 @@ services: networks: - local - vertica: - container_name: dd-vertica - image: vertica/vertica-ce:12.0.0-0 - restart: always - volumes: - - vertica-data:/data:delegated - ports: - - '5433:5433' - - '5444:5444' - expose: - - '5433' - - '5444' - env_file: - - dev/dev.env - tty: true - networks: - - local - +# The vertica docker image is 404 +# vertica: +# container_name: dd-vertica +# image: vertica/vertica-ce:12.0.0-0 +# restart: always +# volumes: +# - vertica-data:/data:delegated +# ports: +# - '5433:5433' +# - '5444:5444' +# expose: +# - '5433' +# - '5444' +# env_file: +# - dev/dev.env +# tty: true +# networks: +# - local + dremio: + container_name: dd-dremio + image: dremio/dremio-oss:latest + restart: always + ports: + - '9047:9047' + - '31010:31010' + - '32010:32010' + expose: + - '9047' + - '31010' + - '32010' + networks: + - local + tty: true + env_file: + - dev/dev.env + volumes: + - dremio-data:/var/lib/dremio:delegated volumes: postgresql-data: mysql-data: clickhouse-data: - vertica-data: + # The vertica docker image is 404 + #vertica-data: + dremio-data: networks: local: diff --git a/docs/install.md b/docs/install.md index cd6d06e..83155d4 100644 --- a/docs/install.md +++ b/docs/install.md @@ -26,6 +26,8 @@ To ensure that the database drivers are compatible with sqeleton, we recommend i - `pip install 'sqeleton[vertica]'` +- `pip install 'sqeleton[dremio]'` + - For BigQuery, see: https://pypi.org/project/google-cloud-bigquery/ _Some drivers have dependencies that cannot be installed using `pip` and still need to be installed manually._ diff --git a/docs/supported-databases.md b/docs/supported-databases.md index 9d4751d..3ae96e3 100644 --- a/docs/supported-databases.md +++ b/docs/supported-databases.md @@ -1,25 +1,26 @@ # List of supported databases -| Database | Status | Connection string | -|---------------|-------------------------------------------------------------------------------------------------------------------------------------|--------| -| PostgreSQL >=10 | 💚 | `postgresql://:@:5432/` | -| MySQL | 💚 | `mysql://:@:5432/` | -| Snowflake | 💚 | `"snowflake://[:]@//?warehouse=&role=[&authenticator=externalbrowser]"` | -| BigQuery | 💚 | `bigquery:///` | -| Redshift | 💚 | `redshift://:@:5439/` | -| Oracle | 💛 | `oracle://:@/database` | -| Presto | 💛 | `presto://:@:8080/` | -| Databricks | 💛 | `databricks://:@//` | -| Trino | 💛 | `trino://:@:8080/` | -| Clickhouse | 💛 | `clickhouse://:@:9000/` | -| Vertica | 💛 | `vertica://:@:5433/` | -| DuckDB | 💛 | | -| ElasticSearch | 📝 | | -| Planetscale | 📝 | | -| Pinot | 📝 | | -| Druid | 📝 | | -| Kafka | 📝 | | -| SQLite | 📝 | | +| Database | Status | Connection string | +|-----------------|-------------------------------------------------------------------------------------------------------------------------------------|---------------------------------------------------------------------------------------------------------------------------------------------------------------------| +| PostgreSQL >=10 | 💚 | `postgresql://:@:5432/` | +| MySQL | 💚 | `mysql://:@:5432/` | +| Snowflake | 💚 | `"snowflake://[:]@//?warehouse=&role=[&authenticator=externalbrowser]"` | +| BigQuery | 💚 | `bigquery:///` | +| Redshift | 💚 | `redshift://:@:5439/` | +| Oracle | 💛 | `oracle://:@/database` | +| Presto | 💛 | `presto://:@:8080/` | +| Databricks | 💛 | `databricks://:@//` | +| Trino | 💛 | `trino://:@:8080/` | +| Clickhouse | 💛 | `clickhouse://:@:9000/` | +| Vertica | 💛 | `vertica://:@:5433/` | +| DuckDB | 💛 | | +| Dremio | 💛 | `dremio://[:]@:32010/?Token=&UseEncryption=&DisableCertificateVerification=` | +| ElasticSearch | 📝 | | +| Planetscale | 📝 | | +| Pinot | 📝 | | +| Druid | 📝 | | +| Kafka | 📝 | | +| SQLite | 📝 | | * 💚: Implemented and thoroughly tested. * 💛: Implemented, but not thoroughly tested yet. diff --git a/poetry.lock b/poetry.lock index 60201e6..783f2be 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.2.1 and should not be changed by hand. 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[metadata] -lock-version = "2.0" +lock-version = "2.1" python-versions = "^3.8" -content-hash = "47969195ee2be5c1237a38822b1c000302bf5bb6bb123dcb5afbb1c22923247f" +content-hash = "238a5920095805e54a677f98a3d6214f5f9bf403f510be15eb63fc6a842012af" diff --git a/pyproject.toml b/pyproject.toml index 33a1844..1d048cf 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "sqeleton" -version = "0.1.7" +version = "0.1.8" description = "Python library for querying SQL databases" authors = ["Erez Shinan "] license = "MIT" @@ -41,12 +41,27 @@ textual = {version=">=0.9.1", optional=true} textual-select = {version="*", optional=true} pygments = {version=">=2.13.0", optional=true} prompt-toolkit = {version=">=3.0.36", optional=true} +pyarrow = [ + {version=">=18.0.0", markers="python_version >= '3.9'", optional=true}, + {version="<18.0.0", markers="python_version < '3.9'", optional=true}, +] +pandas = [ + {version=">=2.1", markers="python_version >= '3.9'", optional=true}, + {version="*", markers="python_version < '3.9'", optional=true}, +] +numpy = [ + {version=">=1.26.4", markers="python_version >= '3.9'", optional=true}, + {version=">=1.24.4", markers="python_version < '3.9'", optional=true}, +] +# sqlalchemy-dremio 3.0.4 is missing a type conversion for datetime[ms] and is not compatible with Python 3.8. Created a +# fork with a fix and opening a PR. +sqlalchemy-dremio = {git = "https://github.com/scottkwalker/sqlalchemy_dremio", rev="308e686b166787941180850ce5813c313d3a9985", optional=true} [tool.poetry.dev-dependencies] parameterized = "*" unittest-parallel = "*" -duckdb = "*" +duckdb = "<1.2" mysql-connector-python = "*" # psycopg2 = "*" psycopg2-binary = "*" @@ -56,6 +71,22 @@ trino = ">=0.314.0" presto-python-client = "*" clickhouse-driver = "*" vertica-python = "*" +pyarrow = [ + {version=">=18.0.0", markers="python_version >= '3.9'"}, + {version="<18.0.0", markers="python_version < '3.9'"}, +] +pandas = [ + {version=">=2.1", markers="python_version >= '3.9'"}, + {version="*", markers="python_version < '3.9'"}, +] +numpy = [ + {version=">=1.26.4", markers="python_version >= '3.9'"}, + {version=">=1.24.4", markers="python_version < '3.9'"}, +] +# sqlalchemy-dremio 3.0.4 is missing a type conversion for datetime[ms] and is not compatible with Python 3.8. Created a +# fork with a fix and opening a PR. +sqlalchemy-dremio = {git = "https://github.com/scottkwalker/sqlalchemy_dremio", rev="308e686b166787941180850ce5813c313d3a9985"} + [tool.poetry.extras] mysql = ["mysql-connector-python"] @@ -69,6 +100,7 @@ clickhouse = ["clickhouse-driver"] vertica = ["vertica-python"] duckdb = ["duckdb"] tui = ["textual", "textual-select", "pygments", "prompt-toolkit"] +dremio = ["sqlalchemy-dremio", "pandas", "pyarrow"] [build-system] requires = ["poetry-core>=1.0.0"] @@ -80,4 +112,3 @@ sqeleton = 'sqeleton.__main__:main' [tool.ruff] line-length = 120 target-version = "py38" - diff --git a/sqeleton/databases/__init__.py b/sqeleton/databases/__init__.py index b0c8f1f..6da5dd6 100644 --- a/sqeleton/databases/__init__.py +++ b/sqeleton/databases/__init__.py @@ -14,5 +14,6 @@ from .clickhouse import Clickhouse from .vertica import Vertica from .duckdb import DuckDB +from .dremio import Dremio connect = Connect() diff --git a/sqeleton/databases/_connect.py b/sqeleton/databases/_connect.py index 40d9bfe..e1af62c 100644 --- a/sqeleton/databases/_connect.py +++ b/sqeleton/databases/_connect.py @@ -22,6 +22,7 @@ from .clickhouse import Clickhouse from .vertica import Vertica from .duckdb import DuckDB +from .dremio import Dremio @dataclass @@ -87,6 +88,7 @@ def match_path(self, dsn): "trino": Trino, "clickhouse": Clickhouse, "vertica": Vertica, + "dremio": Dremio, } @@ -132,6 +134,7 @@ def connect_to_uri(self, db_uri: str, thread_count: Optional[int] = 1) -> Databa - clickhouse - vertica - duckdb + - dremio """ dsn = dsnparse.parse(db_uri) @@ -247,6 +250,7 @@ def __call__(self, db_conf: Union[str, dict], thread_count: Optional[int] = 1, s - trino - clickhouse - vertica + - dremio Example: >>> connect("mysql://localhost/db") diff --git a/sqeleton/databases/dremio.py b/sqeleton/databases/dremio.py new file mode 100644 index 0000000..8e6829b --- /dev/null +++ b/sqeleton/databases/dremio.py @@ -0,0 +1,207 @@ +from math import isnan +from typing import Optional, Union + +from sqeleton.queries import this, SKIP +from .base import BaseDialect, QueryResult, import_helper, parse_table_name, ThreadLocalInterpreter, \ + Mixin_RandomSample, logger, ThreadedDatabase, Mixin_Schema, TIMESTAMP_PRECISION_POS +from ..abcs import Compilable +from ..abcs.database_types import ( + Timestamp, + Integer, + Float, + Text, + FractionalType, + Date, + DbPath, + DbTime, + Decimal, + ColType, + TemporalType, + Boolean, + ColType_UUID +) +from ..abcs.mixins import AbstractMixin_NormalizeValue, AbstractMixin_MD5 +from ..queries.compiler import CompiledCode + + +def query_cursor(c, sql_code: CompiledCode) -> Optional[QueryResult]: + logger.debug(f"[Dremio] Executing SQL: {sql_code.code} || {sql_code.args}") + c.execute(sql_code.code, sql_code.args) + + columns = c.description and [col[0] for col in c.description] + return QueryResult(c.fetchall(), columns) + + +@import_helper("dremio") +def import_dremio(): + import sqlalchemy + + return sqlalchemy + + +class Mixin_MD5(AbstractMixin_MD5): + def md5_as_int(self, s: str) -> str: + return f"CAST(CONV(SUBSTR(MD5({s}), 18), 16, 10) AS BIGINT)" + + +class Mixin_NormalizeValue(AbstractMixin_NormalizeValue): + + def normalize_uuid(self, value: str, coltype: ColType_UUID) -> str: + # Trim doesn't work on CHAR type + return f"TRIM(CAST({value} AS VARCHAR))" + + def normalize_timestamp(self, value: str, coltype: TemporalType) -> str: + """Dremio timestamp contains no more than 6 digits in precision""" + precision_format = ('F' * coltype.precision) if coltype.precision > 0 else '' + return f"rpad(TO_CHAR(CAST({value} AS TIMESTAMP), 'YYYY-MM-DD HH24:MI:SS.{precision_format}'), {TIMESTAMP_PRECISION_POS + 6}, '0')" + + def normalize_number(self, value: str, coltype: FractionalType) -> str: + if coltype.precision > 0: + value = f"format_number({value}, {coltype.precision})" + return f"replace({self.to_string(value)}, ',', '')" + + def normalize_boolean(self, value: str, _coltype: Boolean) -> str: + return self.to_string(f"cast({value} as int)") + +class Dialect(BaseDialect, Mixin_Schema): + name = "Dremio" + ROUNDS_ON_PREC_LOSS = False # False if it truncates. + ARG_SYMBOL = None # Not implemented by Dremio + TYPE_CLASSES = { + # https://docs.dremio.com/current/reference/sql/data-types/ + # com.dremio.dac.explore.DataTypeUtil + "BOOLEAN": Boolean, + "INT": Integer, + "INTEGER": Integer, + "TINYINT": Integer, # An alias for Integer. + "SMALLINT": Integer, # An alias for Integer. + "BIGINT": Integer, + "DECIMAL": Decimal, + "DEC": Decimal, # An alias for Decimal. + "NUMERIC": Decimal, # An alias for Decimal. + "FLOAT": Float, + "DOUBLE": Float, + "REAL": Float, + "DATE": Date, + "TIME": Timestamp, + "TIMESTAMP": Timestamp, # Dremio does not support timezone-aware timestamps. + "CHAR": Text, + "CHARACTER": Text, + "VARCHAR": Text, + "CHARACTER VARYING": Text, # An alias for VARCHAR. + "VARBINARY": Text, + "BINARY VARYING": Text, # An alias for VARBINARY. + } + MIXINS = {Mixin_Schema, Mixin_MD5, Mixin_NormalizeValue, Mixin_RandomSample} + + def list_tables(self, table_schema: str, like: Compilable = None) -> Compilable: + """Query to select the list of tables in the schema. (query return type: table[str]) + + If 'like' is specified, the value is applied to the table name, using the 'like' operator. + """ + return ( + self.table_information() + .where( + this.table_schema == table_schema, + this.table_name.like(like) if like is not None else SKIP, + ) + .select(this.table_name) + ) + + def timestamp_value(self, t: DbTime) -> str: + s = t.isoformat(' ', 'milliseconds') + return f"cast('{s}' as timestamp)" + + def quote(self, s: str): + return f'"{s}"' + + def to_string(self, s: str): + return f"cast({s} as varchar)" + + @staticmethod + def nan_to_none(value: Optional[object]) -> Optional[int]: + if value is not None and not isinstance(value, int): + return None if isnan(value) else int(value) + else: + return value + + def parse_type( + self, + table_path: DbPath, + col_name: str, + type_repr: str, + datetime_precision: int = None, + numeric_precision: int = None, + numeric_scale: int = None, + ) -> ColType: + datetime_precision = self.nan_to_none(datetime_precision) + numeric_precision = self.nan_to_none(numeric_precision) + numeric_scale = self.nan_to_none(numeric_scale) + + return super().parse_type(table_path, col_name, type_repr, datetime_precision, numeric_precision, numeric_scale) + + def set_timezone_to_utc(self) -> str: + """Dremio does not support setting session timezone to UTC. Dremio retrieves the time or timestamp value + with the assumption that the time zone is in Coordinated Universal Time (UTC). Use CONVERT_TIMEZONE in + queries instead. + """ + pass + + + +class Dremio(ThreadedDatabase): + dialect = Dialect() + CONNECT_URI_HELP = ("dremio://[:]@:/?" + "Token=&" + "UseEncryption=&" + "DisableCertificateVerification=") + CONNECT_URI_PARAMS = ['space?', 'Token?', 'UseEncryption?', 'DisableCertificateVerification?'] + + def __init__(self, thread_count, **kw): + self._args = kw + if 'space' in self._args: + self.default_schema = self._args['space'] + super().__init__(thread_count=thread_count) + + def create_connection(self): + # Dremio PAT token is preferred over password. It must be URL-encoded as it will contain special characters. + password_or_token = self._args.get('Token') if self._args.get('Token') else self._args.get('password') + user_pw_str = f"{self._args.get('user')}:{password_or_token}@" + keywords = [] + if 'UseEncryption' in self._args: + keywords.append(f"UseEncryption={self._args['UseEncryption']}") + if 'DisableCertificateVerification' in self._args: + keywords.append(f"DisableCertificateVerification={self._args['DisableCertificateVerification']}") + keyword_str = '?' + '&'.join(keywords) if keywords else '' + + connection_string = (f"dremio+flight://{user_pw_str}{self._args['host']}:{self._args['port']}/" + f"{self.default_schema}{keyword_str}") + + dremiodb = import_dremio() + engine: dremiodb.Engine = dremiodb.create_engine(url=connection_string, echo=True) + + try: + connection: dremiodb.engine.Connection = engine.connect() + except dremiodb.exc.SQLAlchemyError as e: + raise ConnectionError(*e.args) from e + + return connection.connection + + def _query(self, sql_code: Union[str, ThreadLocalInterpreter]): + "Uses the standard SQL cursor interface" + from pyarrow._flight import FlightUnauthenticatedError + try: + return super()._query(sql_code=sql_code) + except FlightUnauthenticatedError as e: + raise ValueError( + 'Possible reasons - Your TOKEN may have expired in the Dremio -> Account Settings -> Personal Access ' + 'Token page. Or you have not provided a username that matches the Personal Access Token: {e}' + ) from e + + def parse_table_name(self, name: str) -> DbPath: + path = parse_table_name(name) + return tuple(i for i in self._normalize_table_path(path) if i is not None) + + @property + def is_autocommit(self) -> bool: + return True diff --git a/tests/common.py b/tests/common.py index bf8b80c..82c8487 100644 --- a/tests/common.py +++ b/tests/common.py @@ -33,6 +33,7 @@ # vertica uri provided for docker - "vertica://vertica:Password1@localhost:5433/vertica" TEST_VERTICA_CONN_STRING: str = os.environ.get("VERTICA_URI") TEST_DUCKDB_CONN_STRING: str = "duckdb://main:@:memory:" +TEST_DREMIO_CONN_STRING: str = os.environ.get("DREMIO_URI") or None DEFAULT_N_SAMPLES = 50 @@ -74,6 +75,7 @@ def get_git_revision_short_hash() -> str: db.Clickhouse: TEST_CLICKHOUSE_CONN_STRING, db.Vertica: TEST_VERTICA_CONN_STRING, db.DuckDB: TEST_DUCKDB_CONN_STRING, + db.Dremio: TEST_DREMIO_CONN_STRING, } _database_instances = {} diff --git a/tests/test_database.py b/tests/test_database.py index 461e9b5..261be8a 100644 --- a/tests/test_database.py +++ b/tests/test_database.py @@ -22,6 +22,7 @@ dbs.Presto, dbs.Trino, dbs.Vertica, + dbs.Dremio, } test_each_database: Callable = make_test_each_database_in_list(TEST_DATABASES) @@ -113,12 +114,13 @@ def test_correct_timezone(self): tz = pytz.timezone("Europe/Berlin") now = datetime.now(tz) - if isinstance(db, dbs.Presto): + if isinstance(db, dbs.Presto) or isinstance(db, dbs.Dremio): ms = now.microsecond // 1000 * 1000 # Presto max precision is 3 now = now.replace(microsecond=ms) db.query(tbl.insert_row(1, now, now)) - db.query(db.dialect.set_timezone_to_utc()) + if self.db_cls not in [dbs.Dremio]: + db.query(db.dialect.set_timezone_to_utc()) t = db.table(tbl).query_schema() t.schema["created_at"] = t.schema["created_at"].replace(precision=t.schema["created_at"].precision) diff --git a/tests/waiting_for_stack_up.sh b/tests/waiting_for_stack_up.sh index a085c76..b4a8997 100644 --- a/tests/waiting_for_stack_up.sh +++ b/tests/waiting_for_stack_up.sh @@ -15,3 +15,29 @@ if [ -n "$VERTICA_URI" ] fi done fi + +if [ -n "${DREMIO_URI}" ] + then + echo "Check Dremio DB running..." + docker ps + + while true + do + if docker logs dd-dremio | tail -n 1000 | grep -q -i "Dremio Daemon Started as master" + then + echo "Dremio DB is ready"; + break; + else + echo "Waiting for Dremio DB starting..."; + sleep 10; + fi + done + + echo "Create first user in Dremio DB..." + curl 'http://localhost:9047/apiv2/bootstrap/firstuser' -X PUT \ + -H 'Authorization: _dremionull' -H 'Content-Type: application/json' \ + --data-binary \ + '{"userName":"dremio","firstName":"your_fname","lastName":"your_lname","email":"your_email","password":"dremio123"}' + + echo "Dremio DB is ready"; +fi \ No newline at end of file