ercantools/_pkgdown.yml at main · ercanlab/ercantools · GitHub

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url: https://ercanlab.github.io/ercantools/

template:
  bootstrap: 5
  bootswatch: flatly

navbar:
  structure:
    left:  [intro, reference, articles, news]
    right: [search, github]
  components:
    github:
      icon: fab fa-github fa-lg
      href: https://github.com/ercanlab/ercantools
      aria-label: GitHub

home:
  title: ercantools — ChIP-seq tools for C. elegans
  description: >
    Visualization and analysis tools for DiffBind ChIP-seq output,
    with a focus on dosage compensation analysis in C. elegans.

reference:
  - title: "Violin plots"
    desc: Compare log2FC or normalized counts between chromosomes.
    contents:
      - violin_log2FC
      - violin_counts
      - violin_log2FC_all_chr
      - violin_counts_all_chr

  - title: "Chromosome scatter plots"
    desc: Chromosome-level significance plots.
    contents:
      - ttest_scatter
      - wilcox_scatter

  - title: "Diagnostic plots"
    desc: MD plot and distribution plots for DiffBind output.
    contents:
      - plot_md
      - plot_distributions

  - title: "Peak utilities"
    desc: Genomic overlap detection and visualization.
    contents:
      - find_overlap_peaks
      - upset_peaks

  - title: "Example data"
    desc: Built-in dataset for examples.
    contents:
      - example_peaks

articles:
  - title: "Tutorials"
    navbar: ~
    contents:
      - violin-plots
      - diagnostic-plots

news:
  - one_page: true