DESCRIPTION

Package: ercantools
Title: Visualization and Analysis Tools for ChIP-seq Differential Binding Data
Version: 0.1.0
Authors@R: c(
    person("Daniel", "Garbozo", email = "dg4739@nyu.edu",
           role = c("aut", "cre")),
    person("Sevinc", "Ercan", email = "sercan@nyu.edu",
           role = "ctb")
  )
Description: A collection of plotting and analysis functions for ChIP-seq
    differential binding data, primarily designed for DiffBind output.
    Provides violin plots for log2 fold change and normalized binding counts,
    t-test scatter plots, MA/MD plots, distribution plots,
    and peak overlap utilities. Designed for C. elegans genomics with a
    focus on dosage compensation analysis (chrX versus autosomes), but
    fully configurable for any organism.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Depends:
    R (>= 4.1.0)
Imports:
    ggplot2 (>= 3.4.0),
    GenomicRanges,
    dplyr (>= 1.1.0),
    tibble (>= 3.2.0),
    ggpubr (>= 0.6.0),
    ggrepel,
    IRanges,
    magrittr,
    stats,
    S4Vectors,
    rlang,
    tidyr
Suggests:
    UpSetR,
    knitr,
    rmarkdown,
    testthat (>= 3.0.0),
    pkgdown,
    BiocManager
URL: https://github.com/ercanlab/ercantools,
    https://ercanlab.github.io/ercantools
BugReports: https://github.com/ercanlab/ercantools/issues
LazyData: true
VignetteBuilder: knitr
Config/roxygen2/version: 8.0.0