ercantools/.github/workflows/pkgdown.yaml at main · ercanlab/ercantools · GitHub

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on:
  push:
    branches: [main, master]
  workflow_dispatch:

name: pkgdown

permissions:
  contents: write
  pages: write
  id-token: write

jobs:
  pkgdown:
    runs-on: ubuntu-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
    steps:
      - uses: actions/checkout@v4

      - uses: r-lib/actions/setup-pandoc@v2

      - uses: r-lib/actions/setup-r@v2
        with:
          use-public-rspm: true

      - name: Install Bioconductor dependencies
        run: |
          Rscript -e 'install.packages("BiocManager")'
          Rscript -e 'BiocManager::install(c("GenomicRanges", "IRanges", "S4Vectors"))'

      - uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: any::pkgdown, local::.
          needs: website

      - name: Build site
        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
        shell: Rscript {0}

      - name: Deploy to GitHub Pages
        uses: JamesIves/github-pages-deploy-action@v4.5.0
        with:
          clean: false
          branch: gh-pages
          folder: docs