docs: update README #6
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| on: | |
| push: | |
| branches: [main, master] | |
| workflow_dispatch: | |
| name: pkgdown | |
| permissions: | |
| contents: write | |
| pages: write | |
| id-token: write | |
| jobs: | |
| pkgdown: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Install Bioconductor dependencies | |
| run: | | |
| Rscript -e 'install.packages("BiocManager")' | |
| Rscript -e 'BiocManager::install(c("GenomicRanges", "IRanges", "S4Vectors"))' | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::pkgdown, local::. | |
| needs: website | |
| - name: Build site | |
| run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE) | |
| shell: Rscript {0} | |
| - name: Deploy to GitHub Pages | |
| uses: JamesIves/github-pages-deploy-action@v4.5.0 | |
| with: | |
| clean: false | |
| branch: gh-pages | |
| folder: docs |