vcf_analysis/requirements.txt at main · elementalcollision/vcf_analysis · GitHub

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# This file was autogenerated by uv via the following command:
#    uv pip compile pyproject.toml --output-file=requirements.txt
lancedb
cfgv==3.4.0
    # via pre-commit
distlib==0.3.9
    # via virtualenv
filelock==3.18.0
    # via virtualenv
identify==2.6.10
    # via pre-commit
iniconfig==2.1.0
    # via pytest
nodeenv==1.9.1
    # via pre-commit
packaging==25.0
    # via pytest
platformdirs==4.3.8
    # via virtualenv
pluggy==1.6.0
    # via pytest
pre-commit==4.2.0
    # via vcf-analysis-agent (pyproject.toml)
pytest==8.3.5
    # via vcf-analysis-agent (pyproject.toml)
pyyaml==6.0.2
    # via pre-commit
virtualenv==20.31.2
    # via pre-commit
cyvcf2
# strands # Temporarily commented out due to build issues
pandas
kuzu
# via vcf-analysis-agent (pyproject.toml)
opentelemetry-api==1.33.1
opentelemetry-sdk==1.33.1
opentelemetry-exporter-otlp==1.33.1
opentelemetry-instrumentation-requests==0.54b1
opentelemetry-instrumentation-logging==0.54b1
opentelemetry-instrumentation-asyncio
structlog
prometheus-client
deprecated
wrapt
importlib-metadata
opentelemetry-semantic-conventions==0.54b1
opentelemetry-exporter-otlp-proto-grpc==1.33.1
grpcio
opentelemetry-exporter-otlp-proto-common==1.33.1
opentelemetry-proto==1.33.1
opentelemetry-exporter-otlp-proto-http==1.33.1
protobuf
googleapis-common-protos
typing-extensions
numpy
pytz
python-dateutil
six
pyarrow
requests
opentelemetry-instrumentation==0.54b1
urllib3
idna
charset-normalizer
certifi
opentelemetry-util-http
# strands # This was the incorrect one
strands-agents
strands-agents-tools
docstring-parser
pydantic
pydantic-core
typing-inspection
annotated-types
boto3
botocore
jmespath
watchdog
ollama
httpx
httpcore
h11
litellm

# Phase 5: Apache Iggy + Streaming Dependencies
iggy-py>=0.4.0
msgpack>=1.0.0
zstandard>=0.21.0
kafka-python>=2.0.2
asyncio-mqtt>=0.16.0