BiojavaManager

[egonw]

• public List DNAsFromString(String dnaString) {
• public List RNAsFromString(String rnaString) {
• public List proteinsFromString(String proteinString) {
• public IDNA DNAfromPlainSequence(String dnaString) {
• public IRNA RNAfromPlainSequence(String rnaString) {
• public IProtein proteinFromPlainSequence(String proteinString) {
• public IDNA DNAfromPlainSequence(String dnaString, String name) {
• public IRNA RNAfromPlainSequence(String rnaString, String name) {
• public IProtein proteinFromPlainSequence(String proteinString,
• public IProtein DNAtoProtein(IDNA dna) {
• public IProtein DNAtoProtein(IDNA dna, String name) {
• public List DNAtoProtein(List dnas) {
• public IRNA DNAtoRNA(IDNA dna) {
• public IRNA DNAtoRNA(IDNA dna, String name) {
• public List DNAtoRNA(List dnas) {
• public IProtein RNAtoProtein(IRNA rna) {
• public IProtein RNAtoProtein(IRNA rna, String name) {
• public List RNAtoProtein(List rnas) {
• public IRNA transcriptionOf(IDNA dna) {
• public IRNA transcriptionOf(IDNA dna, String name) {
• public List transcriptionOf(List dnas) {
• public IProtein translationOf(IRNA rna) {
• public IProtein translationOf(IRNA rna, String name) {
• public List translationOf(List rnas) {
• public String getManagerName() {
• public List DNAsFromFile(IFile file)
• public List RNAsFromFile(IFile file)
• public List proteinsFromFile(IFile file)
• public List sequencesFromFile( IFile file )
• public void sequencesToFASTAfile(final List<? extends ISequence> sequences,
• public String sequencesToFASTAString(
• public RecordableList createSequenceList()
• public String proteinsToFASTAString(final List proteins){
• public String dnaToFASTAString(final List dnas){
• public void proteinsToFASTAfile(List proteins, IFile file) {
• public List features(ISequence sequence) {
• public List sequencesFromString(String s) {