DESCRIPTION

Package: orthologr
Type: Package
Title: Comparative Genomics with R
Version: 0.4.2
Date: 2023-09-08
Authors@R: c(
            person("Hajk-Georg", "Drost", , "hajk-georg.drost@tuebingen.mpg.de", c("aut", "cre")),
            person("Sarah", "Scharfenberg", , "Sarah.Scharfenberg@ipb-halle.de", role = "ctb"),
            person("Jaruwatana Sodai", "Lotharukpong", , "jaruwatana.lotharukpong@tuebingen.mpg.de", role = "ctb", comment = c(ORCID = "0000-0002-3475-0980"))
            )
Maintainer: Hajk-Georg Drost <hajk-georg.drost@tuebingen.mpg.de>
Description: Genome-wide orthology inference and dN/dS estimation between multiple genomes. 
License: GPL-2
SystemRequirements: C++11, Perl
VignetteBuilder: knitr
NeedsCompilation: yes
Depends:
    R (>= 3.1.1),
    data.table (>= 1.9.4)
Imports:
    seqinr,
    metablastr,
    fs,
    parallel (>= 3.0.2),
    dplyr (>= 0.3.0.2),
    doParallel (>= 1.0.8),
    foreach,
    Rcpp (>= 0.11.3),
    Biostrings (>= 2.52.0),
    RSQLite (>= 0.11.4),
    stringr (>= 0.6.2),
    IRanges,
    DBI (>= 0.3.1),
    dtplyr,
    rtracklayer,
    tibble,
    readr,
    ape,
    ggplot2,
    scales,
    Rdpack,
    R.utils,
    benchmarkme
Suggests:
    knitr (>= 1.6),
    rmarkdown (>= 0.3.3),
    devtools (>= 1.6.1),
    testthat (>= 3.0.0)
Remotes: HajkD/metablastr
RdMacros: Rdpack
LinkingTo: Rcpp
URL: https://github.com/drostlab/orthologr
BugReports: https://github.com/drostlab/orthologr/issues
RoxygenNote: 7.2.3
Config/testthat/edition: 3
Encoding: UTF-8