Batch Processing DroneMapper.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Batch Processing Example\n",
    "\n",
    "In this example, we use the `micasense.imageset` class to load a set of directories of images into a list of `micasense.capture` objects, and we iterate over that list saving out each image as an aligned stack of images as separate bands in a single tiff file each. Next, we use the metadata from the original captures to write out a log file of the captures and their locations.  Finally, we use `exiftool` from the command line to inject that metadata into the processed images, allowing us to stitch those images using commercial software such as Pix4D or Agisoft.\n",
    "\n",
    "Note: for this example to work, the images must have a valid RigRelatives tag. This requires RedEdge version of at least 3.4.0 or any version of Altum.  If your images don't meet that spec, you can also follow this support ticket to add the RigRelatives tag to them: https://support.micasense.com/hc/en-us/articles/360006368574-Modifying-older-collections-for-Pix4Dfields-support"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    "%load_ext autoreload\n",
    "%autoreload 2"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Load Images into ImageSet"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "from ipywidgets import FloatProgress, Layout\n",
    "from IPython.display import display\n",
    "import micasense.imageset as imageset\n",
    "import micasense.capture as capture\n",
    "import os, glob\n",
    "import multiprocessing\n",
    "\n",
    "panelNames = None\n",
    "useDLS = True\n",
    "\n",
    "imagePath = os.path.expanduser(os.path.join('/dm','micasense','0000SET'))\n",
    "panelNames = glob.glob(os.path.join(imagePath,'000','IMG_0000_*.tif'))\n",
    "panelCap = capture.Capture.from_filelist(panelNames)\n",
    "\n",
    "outputPath = os.path.join(imagePath,'..','stacks')\n",
    "thumbnailPath = os.path.join(outputPath, '..', 'thumbnails')\n",
    "\n",
    "overwrite = False # usefult to set to false to continue interrupted processing\n",
    "generateThumbnails = True\n",
    "\n",
    "# Allow this code to align both radiance and reflectance images; bu excluding\n",
    "# a definition for panelNames above, radiance images will be used\n",
    "# For panel images, efforts will be made to automatically extract the panel information\n",
    "# but if the panel/firmware is before Altum 1.3.5, RedEdge 5.1.7 the panel reflectance\n",
    "# will need to be set in the panel_reflectance_by_band variable.\n",
    "# Note: radiance images will not be used to properly create NDVI/NDRE images below.\n",
    "if panelNames is not None:\n",
    "    panelCap = capture.Capture.from_filelist(panelNames)\n",
    "else:\n",
    "    panelCap = None\n",
    "\n",
    "if panelCap is not None:\n",
    "    if panelCap.panel_albedo() is not None:\n",
    "        panel_reflectance_by_band = panelCap.panel_albedo()\n",
    "    else:\n",
    "        panel_reflectance_by_band = [0.67, 0.69, 0.68, 0.61, 0.67] #RedEdge band_index order\n",
    "    panel_irradiance = panelCap.panel_irradiance(panel_reflectance_by_band)    \n",
    "    img_type = \"reflectance\"\n",
    "else:\n",
    "    if useDLS:\n",
    "        img_type='reflectance'\n",
    "    else:\n",
    "        img_type = \"radiance\""
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [
    {
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       "model_id": "db30dcd1720d4e99b3ccc386fe5d498b",
       "version_major": 2,
       "version_minor": 0
      },
      "text/plain": [
       "FloatProgress(value=0.0, description='Loading', layout=Layout(width='100%'), max=1.0)"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "CPU times: user 6.07 s, sys: 163 ms, total: 6.24 s\n",
      "Wall time: 19.2 s\n"
     ]
    }
   ],
   "source": [
    "## This progress widget is used for display of the long-running process\n",
    "f = FloatProgress(min=0, max=1, layout=Layout(width='100%'), description=\"Loading\")\n",
    "display(f)\n",
    "def update_f(val):\n",
    "    if (val - f.value) > 0.005 or val == 1: #reduces cpu usage from updating the progressbar by 10x\n",
    "        f.value=val\n",
    "\n",
    "%time imgset = imageset.ImageSet.from_directory(imagePath, progress_callback=update_f)\n",
    "update_f(1.0)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {
    "scrolled": false
   },
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/home/stoermer/miniconda3/envs/micasense/lib/python3.7/site-packages/IPython/core/display.py:694: UserWarning: Consider using IPython.display.IFrame instead\n",
      "  warnings.warn(\"Consider using IPython.display.IFrame instead\")\n"
     ]
    },
    {
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       "\n",
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       "<body>\n",
       "\n",
       "<div id='map' class='map'></div>\n",
       "\n",
       "<script type='text/javascript'>\n",
       "\n",
       "var legendHeader;\n",
       "\n",
       "function calcColorLegend(myColorStops, title) {\n",
       "    // create legend\n",
       "    var legend = document.createElement('div'),\n",
       "        legendContainer = document.getElementsByClassName('mapboxgl-ctrl-bottom-right')[0];\n",
       "\n",
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       "        legend.className = 'legend vertical';\n",
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       "            gradient = document.createElement('div');\n",
       "        gradient.className = 'gradient-bar';\n",
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       "    }\n",
       "    // calculate a legend entries on a Mapbox GL Style Spec property function stops array\n",
       "    for (p = 0; p < myColorStops.length; p++) {\n",
       "        if (!!document.getElementById('legend-color-points-value-' + p)) {\n",
       "            // update the legend if it already exists\n",
       "            document.getElementById('legend-color-points-value-' + p).textContent = myColorStops[p][0];\n",
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       "        }\n",
       "        else {\n",
       "            // create the legend if it doesn't yet exist\n",
       "            var item = document.createElement('li');\n",
       "            item.className = 'legend-item';\n",
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       "            key.className = 'legend-key circle';\n",
       "            key.id = 'legend-color-points-id-' + p;\n",
       "            key.style.backgroundColor = myColorStops[p][1];\n",
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       "            value.className = 'legend-value';\n",
       "            value.id = 'legend-color-points-value-' + p;\n",
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       "            item.appendChild(value);\n",
       "            legendContent.appendChild(item);\n",
       "            \n",
       "            data = document.getElementById('legend-color-points-value-' + p)\n",
       "            // round number values in legend if precision defined\n",
       "            if ((typeof(myColorStops[p][0]) == 'number') && (typeof(null) == 'number')) {\n",
       "                data.textContent = myColorStops[p][0].toFixed(null);\n",
       "            }\n",
       "            else {\n",
       "                data.textContent = myColorStops[p][0];\n",
       "            }\n",
       "            // add color stop to gradient list\n",
       "            if (false === true) {\n",
       "                if (p < myColorStops.length - 1) {\n",
       "                    gradientText = gradientText + myColorStops[p][1] + ', ';\n",
       "                }\n",
       "                else {\n",
       "                    gradientText = gradientText + myColorStops[p][1] + ')';\n",
       "                }\n",
       "                if ('vertical' === 'vertical') {\n",
       "                    gradientText = gradientText.replace('to right', 'to bottom');\n",
       "                }\n",
       "            }\n",
       "        }\n",
       "    }\n",
       "    if (false === true) {\n",
       "        // convert to gradient scale appearance\n",
       "        gradient.style.background = gradientText;\n",
       "        // hide legend keys generated above\n",
       "        var keys = document.getElementsByClassName('legend-key');\n",
       "        for (var i=0; i < keys.length; i++) {\n",
       "            keys[i].style.visibility = 'hidden';\n",
       "        }\n",
       "        if ('vertical' === 'vertical') {\n",
       "            gradient.style.height = (legendContent.offsetHeight - 6) + 'px';\n",
       "        }\n",
       "    }\n",
       "    // add class for styling bordered legend keys\n",
       "    if (true) {\n",
       "        var keys = document.getElementsByClassName('legend-key');\n",
       "        for (var i=0; i < keys.length; i++) {\n",
       "            if (keys[i]) {\n",
       "                keys[i].classList.add('bordered');\n",
       "            }\n",
       "        }\n",
       "        var gradientBars = document.getElementsByClassName('gradient-bar');\n",
       "        for (var i=0; i < keys.length; i++) {\n",
       "            if (gradientBars[i]) {\n",
       "                gradientBars[i].classList.add('bordered');\n",
       "            }\n",
       "        }\n",
       "    }\n",
       "    // update right-margin for compact Mapbox attribution based on calculated legend width\n",
       "    updateAttribMargin(legend);\n",
       "    updateLegendMargin(legend);\n",
       "}\n",
       "\n",
       "\n",
       "function calcRadiusLegend(myRadiusStops, title, color) {\n",
       "\n",
       "    // maximum legend item height\n",
       "    var maxLegendItemHeight = 2 * myRadiusStops[myRadiusStops.length - 1][1];\n",
       "\n",
       "    // create legend\n",
       "    var legend = document.createElement('div');\n",
       "    legend.className = 'legend vertical legend-variable-radius';\n",
       "\n",
       "    legend.id = 'legend-1';\n",
       "    document.body.appendChild(legend);\n",
       "\n",
       "    // add legend header and content elements\n",
       "    var mytitle = document.createElement('div'),\n",
       "        legendContent = document.createElement('ul');\n",
       "    legendHeader = document.createElement('div');\n",
       "    mytitle.textContent = title;\n",
       "    mytitle.className = 'legend-title'\n",
       "    legendHeader.className = 'legend-header'\n",
       "    legendContent.className = 'legend-content'\n",
       "    legendHeader.appendChild(mytitle);\n",
       "    legend.appendChild(legendHeader);\n",
       "    legend.appendChild(legendContent);\n",
       "\n",
       "    // calculate a legend entries on a Mapbox GL Style Spec property function stops array\n",
       "    for (p = 0; p < myRadiusStops.length; p++) {\n",
       "        if (!!document.getElementById('legend-radius-points-value-' + p)) {\n",
       "            //update the legend if it already exists\n",
       "            document.getElementById('legend-radius-points-value-' + p).textContent = myRadiusStops[p][0];\n",
       "            document.getElementById('legend-radius-points-id-' + p).style.backgroundColor = color;\n",
       "        }\n",
       "        else {\n",
       "            // create the legend if it doesn't yet exist\n",
       "            var item = document.createElement('li');\n",
       "            item.className = 'legend-item';\n",
       "            item.height = '' + maxLegendItemHeight + 'px';\n",
       "\n",
       "            var key = document.createElement('span');\n",
       "            key.className = 'legend-key circle';\n",
       "            key.id = 'legend-radius-points-id-' + p;\n",
       "            key.style.backgroundColor = color;   \n",
       "\n",
       "            key.style.width = '' + myRadiusStops[p][1] * 2 + 'px';\n",
       "            key.style.height = '' + myRadiusStops[p][1] * 2 + 'px';\n",
       "\n",
       "            keyVerticalMargin = (maxLegendItemHeight - myRadiusStops[p][1] * 2) * 0.5;\n",
       "            key.style.marginTop = '' + keyVerticalMargin + 'px';\n",
       "            key.style.marginBottom = '' + keyVerticalMargin + 'px';\n",
       "\n",
       "            var value = document.createElement('span');\n",
       "            value.className = 'legend-value';\n",
       "            value.id = 'legend-radius-points-value-' + p;\n",
       "\n",
       "            item.appendChild(key);\n",
       "            item.appendChild(value);\n",
       "            legendContent.appendChild(item);\n",
       "            \n",
       "            data = document.getElementById('legend-radius-points-value-' + p)\n",
       "\n",
       "            // round number values in legend if precision defined\n",
       "            if ((typeof(myRadiusStops[p][0]) == 'number') && (typeof(null) == 'number')) {\n",
       "                data.textContent = myRadiusStops[p][0].toFixed(null);\n",
       "            }\n",
       "            else {\n",
       "                data.textContent = myRadiusStops[p][0];\n",
       "            }\n",
       "        }\n",
       "    }\n",
       "\n",
       "    // add class for styling bordered legend keys\n",
       "    if (true) {\n",
       "        var keys = document.getElementsByClassName('legend-key');\n",
       "        for (var i=0; i < keys.length; i++) {\n",
       "            if (keys[i]) {\n",
       "                keys[i].classList.add('bordered');\n",
       "            }\n",
       "        }\n",
       "    }\n",
       "\n",
       "    // update right-margin for compact Mapbox attribution based on calculated legend width\n",
       "    updateAttribMargin(legend);\n",
       "    updateLegendMargin(legend);\n",
       "\n",
       "}\n",
       "\n",
       "\n",
       "function updateAttribMargin(legend) {\n",
       "\n",
       "    // default margin is based on calculated legend width\n",
       "    var attribMargin = legend.offsetWidth + 15;\n",
       "    \n",
       "    // if horizontal legend layout (multiple legends are stacked vertically)\n",
       "    if ('vertical' === 'horizontal') {\n",
       "        document.getElementsByClassName('mapboxgl-ctrl-attrib')[0].style.marginRight = (attribMargin).toString() + 'px';\n",
       "    }\n",
       "    // vertical legend layout means multiple legends are side-by-side\n",
       "    else if ('vertical' === 'vertical') {\n",
       "        var currentMargin = Number(document.getElementsByClassName('mapboxgl-ctrl-attrib')[0].style.marginRight.replace('px', ''));\n",
       "        document.getElementsByClassName('mapboxgl-ctrl-attrib')[0].style.marginRight = (attribMargin + currentMargin).toString() + 'px';\n",
       "    }\n",
       "}\n",
       "\n",
       "\n",
       "function updateLegendMargin(legend) {\n",
       "\n",
       "    var verticalLegends = document.getElementsByClassName('legend vertical'),\n",
       "        horizontalLegends = document.getElementsByClassName('legend horizontal');\n",
       "\n",
       "    if (verticalLegends.length > 1) {\n",
       "        for (i = 1; i < verticalLegends.length; i++) {\n",
       "            verticalLegends[i].style.marginRight = (legend.offsetWidth - 5).toString() + 'px';\n",
       "            var legend = verticalLegends[i];\n",
       "        }\n",
       "    }\n",
       "    else if (horizontalLegends.length > 1) {\n",
       "        for (i = 1; i < horizontalLegends.length; i++) {\n",
       "            horizontalLegends[i].style.marginBottom = (legend.offsetHeight + 15).toString() + 'px';\n",
       "            var legend = horizontalLegends[i];\n",
       "        }\n",
       "    }\n",
       "}\n",
       "\n",
       "\n",
       "function generateInterpolateExpression(propertyValue, stops) {\n",
       "    var expression;\n",
       "    if (propertyValue == 'zoom') {\n",
       "        expression = ['interpolate', ['exponential', 1.2], ['zoom']]\n",
       "    }\n",
       "    else if (propertyValue == 'heatmap-density') {\n",
       "        expression = ['interpolate', ['linear'], ['heatmap-density']]\n",
       "    }\n",
       "    else {\n",
       "        expression = ['interpolate', ['linear'], ['get', propertyValue]]\n",
       "    }\n",
       "\n",
       "    for (var i=0; i<stops.length; i++) {\n",
       "        expression.push(stops[i][0], stops[i][1])\n",
       "    }\n",
       "    return expression\n",
       "}\n",
       "\n",
       "\n",
       "function generateMatchExpression(propertyValue, stops, defaultValue) {\n",
       "    var expression;\n",
       "    expression = ['match', ['get', propertyValue]]\n",
       "    for (var i=0; i<stops.length; i++) {\n",
       "        expression.push(stops[i][0], stops[i][1])\n",
       "    }\n",
       "    expression.push(defaultValue)\n",
       "    \n",
       "    return expression\n",
       "}\n",
       "\n",
       "\n",
       "function generatePropertyExpression(expressionType, propertyValue, stops, defaultValue) {\n",
       "    var expression;\n",
       "    if (expressionType == 'match') {\n",
       "        expression = generateMatchExpression(propertyValue, stops, defaultValue)\n",
       "    }\n",
       "    else if (propertyValue == 'identity') {\n",
       "        expression = ['get', propertyValue]\n",
       "    }\n",
       "    else {\n",
       "        expression = generateInterpolateExpression(propertyValue, stops)\n",
       "    }\n",
       "\n",
       "    return expression\n",
       "}\n",
       "\n",
       "</script>\n",
       "\n",
       "<!-- main map creation code, extended by mapboxgl/templates/circle.html -->\n",
       "<script type='text/javascript'>\n",
       "\n",
       "    mapboxgl.accessToken = 'pk.eyJ1IjoibWljYXNlbnNlIiwiYSI6ImNqYWx5dWNteTJ3cWYzMnBicmZid3g2YzcifQ.Zrq9t7GYocBtBzYyT3P4sw';\n",
       "\n",
       "    var transformRequest = function(url, resourceType) {\n",
       "        const isMapboxRequest = url.slice(8, 22) === 'api.mapbox.com' ||\n",
       "          url.slice(10, 26) === 'tiles.mapbox.com';\n",
       "      \n",
       "        return {\n",
       "          url: isMapboxRequest ? url.replace('?', '?pluginName=PythonMapboxgl&') : url\n",
       "        }\n",
       "    };\n",
       "\n",
       "    var map = new mapboxgl.Map({\n",
       "        container: 'map',\n",
       "        attributionControl: false,\n",
       "        style: 'mapbox://styles/mapbox/satellite-streets-v9',\n",
       "        center: [-119.7308007, 46.2934393],\n",
       "        zoom: 16,\n",
       "        pitch: 0,\n",
       "        bearing: 0,\n",
       "        scrollZoom: true,\n",
       "        touchZoom: true,\n",
       "        doubleClickZoom: true,\n",
       "        boxZoom: true,\n",
       "        preserveDrawingBuffer: false,\n",
       "        transformRequest: transformRequest\n",
       "    });\n",
       "\n",
       "    \n",
       "    \n",
       "        map.addControl(new mapboxgl.AttributionControl({ compact: true }));\n",
       "\n",
       "    \n",
       "\n",
       "    \n",
       "\n",
       "        map.addControl(new mapboxgl.NavigationControl());\n",
       "\n",
       "    \n",
       "\n",
       "    \n",
       "\n",
       "    \n",
       "        \n",
       "            calcColorLegend([[-3.13642275084244, 'rgb(255,255,204)'], [-2.4566010859034275, 'rgb(255,237,160)'], [-1.542534223258159, 'rgb(254,217,118)'], [-0.6410766298396642, 'rgb(254,178,76)'], [-0.11281270946194596, 'rgb(253,141,60)'], [0.3275423817297414, 'rgb(252,78,42)'], [2.105684719587082, 'rgb(227,26,28)'], [2.583260553407935, 'rgb(189,0,38)'], [3.12440659832895, 'rgb(128,0,38)']] , 'dls-yaw');\n",
       "        \n",
       "    \n",
       "        \n",
       "\n",
       "\n",
       "    \n",
       "        \n",
       "        \n",
       "\n",
       "    \n",
       "\n",
       "    \n",
       "\n",
       "    map.on('style.load', function() {\n",
       "        \n",
       "        \n",
       "\n",
       "        map.addSource('data', {\n",
       "            'type': 'geojson',\n",
       "            'data': {'type': 'FeatureCollection', 'features': [{'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.729913, 46.29256]}, 'properties': {'altitude': 353.901, 'capture_id': 'DkV0MxKhT8Gvb6xtwOQQ', 'dls-yaw': 0.0, 'dls-pitch': 0.0, 'dls-roll': 0.0, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.72991, 46.292545]}, 'properties': {'altitude': 353.045, 'capture_id': 'Bc2FQAR2xzzlEdaz7A20', 'dls-yaw': 0.0, 'dls-pitch': 0.0, 'dls-roll': 0.0, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.729899, 46.292602]}, 'properties': {'altitude': 352.494, 'capture_id': 'cxDKA8J3vGbKF0cyM9QA', 'dls-yaw': -1.1583037613, 'dls-pitch': 0.0381191986, 'dls-roll': 0.0826051931, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.72995, 46.292603]}, 'properties': {'altitude': 426.316, 'capture_id': 'zSs2WMy0ISKgq1QnuHB4', 'dls-yaw': -0.0349171913, 'dls-pitch': 0.0605651241, 'dls-roll': 0.0381673495, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.730162, 46.29282]}, 'properties': {'altitude': 477.151, 'capture_id': 't7wVpEcjSxLVujcc2ggU', 'dls-yaw': -0.2181571483, 'dls-pitch': 0.0868780716, 'dls-roll': -0.1139410079, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.730323, 46.292958]}, 'properties': {'altitude': 477.222, 'capture_id': '3vAqCEIQpDn2hDIzbAWj', 'dls-yaw': -0.2697699389, 'dls-pitch': 0.1339888356, 'dls-roll': -0.0538482413, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.730482, 46.293122]}, 'properties': {'altitude': 477.432, 'capture_id': 'ZzRIQahcrQ0kSB7TinuQ', 'dls-yaw': -0.2951293076, 'dls-pitch': 0.1162631377, 'dls-roll': -0.0420396426, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.730642, 46.293281]}, 'properties': {'altitude': 477.962, 'capture_id': 'GnwoF3J1PyrLhyRUol89', 'dls-yaw': -0.2924886212, 'dls-pitch': 0.1525748024, 'dls-roll': 0.0051079548, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.730806, 46.293439]}, 'properties': {'altitude': 477.823, 'capture_id': 'K0vU4q6mWm1YMGlWqKAg', 'dls-yaw': -0.2933280927, 'dls-pitch': 0.168875152, 'dls-roll': -0.0423769479, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.730942, 46.29357]}, 'properties': {'altitude': 477.506, 'capture_id': 'hmceAub8nnGtVEwI9QHi', 'dls-yaw': -0.2917310736, 'dls-pitch': 0.2073118599, 'dls-roll': -0.0348748358, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731104, 46.293731]}, 'properties': {'altitude': 477.314, 'capture_id': 'T7xWthgrZr0OE1GJFtWd', 'dls-yaw': -0.282912807, 'dls-pitch': 0.1704398168, 'dls-roll': -0.0108667026, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731374, 46.293998]}, 'properties': {'altitude': 476.604, 'capture_id': 'y7fyG9PdnxPITNkbrq8Q', 'dls-yaw': -0.2750384865, 'dls-pitch': 0.2088292664, 'dls-roll': -0.0744088042, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731428, 46.294051]}, 'properties': {'altitude': 476.334, 'capture_id': 'mAHSnaVeplMBGkV52STG', 'dls-yaw': -0.260112126, 'dls-pitch': 0.1947766104, 'dls-roll': 0.0291055976, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731625, 46.294252]}, 'properties': {'altitude': 475.738, 'capture_id': 'Ua6CgUa1G68bgaMcU6Aq', 'dls-yaw': -0.2553073176, 'dls-pitch': 0.2067687262, 'dls-roll': 0.0042281166, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731763, 46.294384]}, 'properties': {'altitude': 476.546, 'capture_id': 'kmBLe6bDXgJaCIj0Clso', 'dls-yaw': -0.2599405805, 'dls-pitch': 0.2250505629, 'dls-roll': -0.0416571792, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731912, 46.294529]}, 'properties': {'altitude': 477.327, 'capture_id': '1wkeMlbtK6kICkIGdjbd', 'dls-yaw': -0.2637053436, 'dls-pitch': 0.2555005825, 'dls-roll': -0.0679640871, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.732089, 46.2947]}, 'properties': {'altitude': 477.12, 'capture_id': 'SCuYYPfAkHZo9Hg9UZ5p', 'dls-yaw': -0.2453494674, 'dls-pitch': 0.2278861407, 'dls-roll': -0.0374661023, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.732251, 46.294854]}, 'properties': {'altitude': 476.749, 'capture_id': '7CPAM1fN2RiDHwaqis6N', 'dls-yaw': -0.2131196753, 'dls-pitch': 0.0145796617, 'dls-roll': -0.0539356251, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.732342, 46.294932]}, 'properties': {'altitude': 475.614, 'capture_id': 'cI7Fyg38fVsG210W8cDr', 'dls-yaw': -0.2827932882, 'dls-pitch': 0.2037010878, 'dls-roll': -0.1324438448, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.732304, 46.29493]}, 'properties': {'altitude': 475.913, 'capture_id': 'p9hRIM989x9ZUP21ydc4', 'dls-yaw': 1.8641637027, 'dls-pitch': 0.4545010237, 'dls-roll': 0.1453788508, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731777, 46.294931]}, 'properties': {'altitude': 475.696, 'capture_id': 'GfqcZ4uZ0rtaPWtDy6dT', 'dls-yaw': 1.7418892463, 'dls-pitch': 0.2484302042, 'dls-roll': -0.0677930056, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.73166, 46.294931]}, 'properties': {'altitude': 475.541, 'capture_id': 'vutNmv531JhJ7fKkKFfh', 'dls-yaw': 1.7392378184, 'dls-pitch': 0.2058419624, 'dls-roll': -0.0787101399, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731401, 46.294928]}, 'properties': {'altitude': 475.584, 'capture_id': 'FfqcCux9OxAaVF4rnq0J', 'dls-yaw': 1.7402051132, 'dls-pitch': 0.2594773202, 'dls-roll': -0.0627151567, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731144, 46.294928]}, 'properties': {'altitude': 475.132, 'capture_id': 'bV30S3DtlW6z935ou16c', 'dls-yaw': 1.744610894, 'dls-pitch': 0.2485470366, 'dls-roll': -0.0454936881, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.730905, 46.294648]}, 'properties': {'altitude': 479.114, 'capture_id': 'MVR54hgD6QewPzx63wCy', 'dls-yaw': -1.1664422201, 'dls-pitch': 0.3330097139, 'dls-roll': -0.1070831331, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731184, 46.294627]}, 'properties': {'altitude': 478.875, 'capture_id': 'sQRp6EW4hdn7q1OtJwZO', 'dls-yaw': -1.1358419539, 'dls-pitch': 0.3113416818, 'dls-roll': -0.0382847073, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731507, 46.294599]}, 'properties': {'altitude': 479.533, 'capture_id': 'N7GoX77Votd8o30Lvbzz', 'dls-yaw': -1.1186859078, 'dls-pitch': 0.3208297279, 'dls-roll': -0.0676002782, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731736, 46.294579]}, 'properties': {'altitude': 479.267, 'capture_id': 'twWYtxTW4hOAqLyU8HFL', 'dls-yaw': -1.1204699998, 'dls-pitch': 0.3255413598, 'dls-roll': -0.0995905855, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.732038, 46.294556]}, 'properties': {'altitude': 478.91, 'capture_id': '1yGT60tcy22UU4ZzKm2E', 'dls-yaw': -1.0927693731, 'dls-pitch': 0.3228165, 'dls-roll': -0.0190766592, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.732306, 46.29453]}, 'properties': {'altitude': 477.924, 'capture_id': 'd8d9YwvI3G38XJcokNGg', 'dls-yaw': -1.0288254403, 'dls-pitch': -0.1704336322, 'dls-roll': -0.1963157747, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.732275, 46.29454]}, 'properties': {'altitude': 476.698, 'capture_id': 'U3Tjo3aDTRaH6RKW66uT', 'dls-yaw': 2.0447665498, 'dls-pitch': 0.3350178558, 'dls-roll': 0.0640998235, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731932, 46.294544]}, 'properties': {'altitude': 476.959, 'capture_id': 'QmEi8dhPrp1lC4B48ks6', 'dls-yaw': 1.9862870453, 'dls-pitch': 0.0672705557, 'dls-roll': -0.0417090251, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731609, 46.294549]}, 'properties': {'altitude': 477.065, 'capture_id': 'acc4B6nSsQmvrZ3zmnM4', 'dls-yaw': 1.9787681794, 'dls-pitch': 0.1188602933, 'dls-roll': -0.006799446, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731351, 46.294548]}, 'properties': {'altitude': 477.048, 'capture_id': '83MMGqDM13ZNW1DUaD9q', 'dls-yaw': 1.9719204277, 'dls-pitch': 0.0990907087, 'dls-roll': -0.0830143347, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731116, 46.294546]}, 'properties': {'altitude': 476.804, 'capture_id': 'alM5RVfeyDcO3xx9YMkz', 'dls-yaw': 1.9894768518, 'dls-pitch': 0.1291988968, 'dls-roll': -0.0522149931, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.730806, 46.294548]}, 'properties': {'altitude': 476.47, 'capture_id': '03eiR3xiYHzYmZ7pEumE', 'dls-yaw': 2.0030101864, 'dls-pitch': 0.0901237541, 'dls-roll': -0.1055563867, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.730525, 46.294548]}, 'properties': {'altitude': 475.8, 'capture_id': 'SPqK13E9qTIBL22uRJIY', 'dls-yaw': 2.0181300325, 'dls-pitch': 0.1436488934, 'dls-roll': -0.1068200099, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.730241, 46.294548]}, 'properties': {'altitude': 475.686, 'capture_id': 'Lofe0T5y8GNMyLX4SgbP', 'dls-yaw': 2.0498588803, 'dls-pitch': 0.1336142841, 'dls-roll': -0.0487077533, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.730005, 46.294547]}, 'properties': {'altitude': 476.04, 'capture_id': '2penoJoaprJqyaGHz0Or', 'dls-yaw': 2.0753757959, 'dls-pitch': 0.1386400699, 'dls-roll': -0.0045132283, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 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'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731447, 46.292725]}, 'properties': {'altitude': 475.91, 'capture_id': 'vyuF6oVhTlvSUxamHI6Y', 'dls-yaw': 0.1176644463, 'dls-pitch': 0.2333077485, 'dls-roll': 0.0508964354, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.73173, 46.292727]}, 'properties': {'altitude': 475.99, 'capture_id': 'XSuGYfbdlhMvAxdjCQ7h', 'dls-yaw': 0.146888663, 'dls-pitch': 0.2633357647, 'dls-roll': 0.0425027369, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731982, 46.292724]}, 'properties': {'altitude': 476.155, 'capture_id': 'j4LhJ76f1OnWPdzE6Klr', 'dls-yaw': 0.1733907407, 'dls-pitch': 0.2816350819, 'dls-roll': 0.0183238597, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.732249, 46.292727]}, 'properties': {'altitude': 476.848, 'capture_id': 'OtmDyYZp58RcAMjVHW6l', 'dls-yaw': 0.192205701, 'dls-pitch': 0.2728071842, 'dls-roll': 0.0133051288, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.732473, 46.292703]}, 'properties': {'altitude': 477.115, 'capture_id': '5nNLqvWtbgFjb3KgSTla', 'dls-yaw': -0.7919581264, 'dls-pitch': 0.0760909118, 'dls-roll': 0.1365182204, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.732465, 46.292649]}, 'properties': {'altitude': 477.504, 'capture_id': 'fKObTzCv7siRAHPl7Cq5', 'dls-yaw': -1.4065713237, 'dls-pitch': 0.0094609301, 'dls-roll': -0.204109935, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.732441, 46.292672]}, 'properties': {'altitude': 479.121, 'capture_id': '9oT31ZQNPrG24LkQ0BpA', 'dls-yaw': 2.8613980555, 'dls-pitch': 0.2867590188, 'dls-roll': 0.2196828457, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.732172, 46.292841]}, 'properties': {'altitude': 479.074, 'capture_id': '2Wj1CyxU0LkqJEwajiBm', 'dls-yaw': 2.6452155379, 'dls-pitch': -0.3506858549, 'dls-roll': -0.0313947881, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.73197, 46.292949]}, 'properties': {'altitude': 474.563, 'capture_id': 'GkF9Qa95EuboiJeZY1HZ', 'dls-yaw': 2.7805019369, 'dls-pitch': -0.3501827099, 'dls-roll': 0.0563350931, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731944, 46.292977]}, 'properties': {'altitude': 472.802, 'capture_id': 'Z1eqVKkQrVqwhjviJRpa', 'dls-yaw': 2.6430826681, 'dls-pitch': 0.0769608304, 'dls-roll': 0.1457614167, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731629, 46.292921]}, 'properties': {'altitude': 473.53, 'capture_id': 'jsFvFtvE1JIJWoheLKcd', 'dls-yaw': -2.8607598901, 'dls-pitch': 0.073777298, 'dls-roll': 0.0083343819, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731371, 46.292931]}, 'properties': {'altitude': 472.219, 'capture_id': '5oQX0l6suZ0znVpghm8A', 'dls-yaw': -2.8828301211, 'dls-pitch': 0.1302178321, 'dls-roll': -0.0187150184, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731106, 46.292931]}, 'properties': {'altitude': 472.517, 'capture_id': 'LfMG6o5t40Rol6JG0lEk', 'dls-yaw': -2.8631402329, 'dls-pitch': 0.128201029, 'dls-roll': -0.0091321956, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.730841, 46.292931]}, 'properties': {'altitude': 473.028, 'capture_id': '0nWfoxLqUgCDpRmqNpo6', 'dls-yaw': -2.8339391892, 'dls-pitch': 0.1108606011, 'dls-roll': -0.027156341, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.730668, 46.29289]}, 'properties': {'altitude': 472.483, 'capture_id': 'ubigH6pWjO8Te9GuXA62', 'dls-yaw': -1.2432197121, 'dls-pitch': 0.4517828355, 'dls-roll': 0.0953472111, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.730659, 46.292709]}, 'properties': {'altitude': 472.886, 'capture_id': 'THoibJP7Qpr0yjK40X2j', 'dls-yaw': -1.3121547822, 'dls-pitch': -0.2087782196, 'dls-roll': -0.0958203279, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.730743, 46.292697]}, 'properties': {'altitude': 472.003, 'capture_id': 'ubIqLmx5ddbtnFUZ6Kr6', 'dls-yaw': 0.2480284907, 'dls-pitch': 0.2145279364, 'dls-roll': 0.0985004088, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731014, 46.292694]}, 'properties': {'altitude': 473.182, 'capture_id': 'djia1dXwDw78IW4oIkZY', 'dls-yaw': 0.2425932439, 'dls-pitch': 0.1450948115, 'dls-roll': 0.0340229943, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731296, 46.292693]}, 'properties': {'altitude': 473.541, 'capture_id': '0YToswWmXRXBe4G17KPV', 'dls-yaw': 0.2522695476, 'dls-pitch': 0.1671598411, 'dls-roll': -0.0100986872, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731547, 46.292695]}, 'properties': {'altitude': 473.548, 'capture_id': 'Wxb8rGrCdLMeJiLxBbTM', 'dls-yaw': 0.2739118382, 'dls-pitch': 0.2012383085, 'dls-roll': -0.040722656, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731843, 46.292696]}, 'properties': {'altitude': 473.504, 'capture_id': '2o7jLX5b0ZQs7HcaRR6Q', 'dls-yaw': 0.3275423817, 'dls-pitch': -0.1711110239, 'dls-roll': -0.0491799829, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731904, 46.292642]}, 'properties': {'altitude': 471.867, 'capture_id': '7gGQQoFRfYPS2NAsoK1t', 'dls-yaw': -1.2881897528, 'dls-pitch': 0.1835941636, 'dls-roll': -0.0921753792, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731895, 46.292468]}, 'properties': {'altitude': 472.323, 'capture_id': 'LV44jBnVKSWCh00fSPwh', 'dls-yaw': -1.6074084178, 'dls-pitch': -0.1220778833, 'dls-roll': 0.2023259467, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731797, 46.292463]}, 'properties': {'altitude': 471.928, 'capture_id': 'HowC0VPB1qTXYjGJ9CVH', 'dls-yaw': -2.8458884869, 'dls-pitch': 0.0308113633, 'dls-roll': -0.0194587575, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731534, 46.292462]}, 'properties': {'altitude': 472.28, 'capture_id': 'fQ50p1T50mXy4RUCEXnK', 'dls-yaw': -2.8533612104, 'dls-pitch': 0.0359962689, 'dls-roll': -0.0935179509, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731238, 46.292462]}, 'properties': {'altitude': 471.344, 'capture_id': 'mrfDgsYO45vJ4QZRTxYU', 'dls-yaw': -2.8249284753, 'dls-pitch': 0.0584083395, 'dls-roll': -0.0715834892, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.731003, 46.29246]}, 'properties': {'altitude': 471.574, 'capture_id': 'FXhvfu67XfZoUjMPIU4m', 'dls-yaw': -2.7974941443, 'dls-pitch': 0.0602401198, 'dls-roll': -0.1150746628, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.730724, 46.292458]}, 'properties': {'altitude': 471.748, 'capture_id': 'fJ7Gkj90dWtgbNe4vI7E', 'dls-yaw': -2.7254936083, 'dls-pitch': -0.2917665798, 'dls-roll': -0.08050137, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.730494, 46.292482]}, 'properties': {'altitude': 475.529, 'capture_id': 'wPOAFmAxwEzi5dtKCpCi', 'dls-yaw': -2.9588784729, 'dls-pitch': 0.1318618224, 'dls-roll': -0.0451728192, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.730221, 46.292533]}, 'properties': {'altitude': 476.329, 'capture_id': 'cJ73gPgsClKE53x8bHl0', 'dls-yaw': -2.9451051524, 'dls-pitch': 0.1710932906, 'dls-roll': 0.0243082235, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}, {'type': 'Feature', 'geometry': {'type': 'Point', 'coordinates': [-119.729978, 46.292585]}, 'properties': {'altitude': 476.125, 'capture_id': 'PXWPrImU571YhrbUDia6', 'dls-yaw': -2.9783893107, 'dls-pitch': -0.1059646539, 'dls-roll': -0.1563280845, 'irr-475': 0, 'irr-560': 0, 'irr-668': 0, 'irr-840': 0, 'irr-717': 0, 'irr-10000': 0}}]},\n",
       "            'buffer': 1,\n",
       "            'maxzoom': 14,\n",
       "            'generateId': true\n",
       "        });\n",
       "\n",
       "        map.addLayer({\n",
       "            'id': 'label',\n",
       "            'source': 'data',\n",
       "            'type': 'symbol',\n",
       "            'maxzoom': 24,\n",
       "            'minzoom': 0,\n",
       "            'layout': {\n",
       "                \n",
       "                'text-size' : generateInterpolateExpression('zoom', [[0, 8],[22, 3* 8]] ),\n",
       "                'text-offset': [0,-1]\n",
       "            },\n",
       "            'paint': {\n",
       "                'text-halo-color': 'white',\n",
       "                'text-halo-width': generatePropertyExpression('interpolate', 'zoom', [[0,1], [18,5* 1]]),\n",
       "                'text-color': ['case',\n",
       "                    ['boolean', ['feature-state', 'hover'], false], \n",
       "                    'black', \n",
       "                    '#131516']\n",
       "            }\n",
       "        }, '' )\n",
       "        \n",
       "        map.addLayer({\n",
       "            'id': 'circle',\n",
       "            'source': 'data',\n",
       "            'type': 'circle',\n",
       "            'maxzoom': 24,\n",
       "            'minzoom': 0,\n",
       "            'paint': {\n",
       "                \n",
       "                    'circle-color': ['case',\n",
       "                        ['boolean', ['feature-state', 'hover'], false], \n",
       "                        'black',\n",
       "                        generatePropertyExpression('interpolate', 'dls-yaw', [[-3.13642275084244, 'rgb(255,255,204)'], [-2.4566010859034275, 'rgb(255,237,160)'], [-1.542534223258159, 'rgb(254,217,118)'], [-0.6410766298396642, 'rgb(254,178,76)'], [-0.11281270946194596, 'rgb(253,141,60)'], [0.3275423817297414, 'rgb(252,78,42)'], [2.105684719587082, 'rgb(227,26,28)'], [2.583260553407935, 'rgb(189,0,38)'], [3.12440659832895, 'rgb(128,0,38)']], 'grey' )],\n",
       "                    \n",
       "                'circle-radius' : generatePropertyExpression('interpolate', 'zoom', [[0,1], [22,10 * 1]]),\n",
       "                'circle-stroke-color': ['case',\n",
       "                    ['boolean', ['feature-state', 'hover'], false], \n",
       "                    'black', \n",
       "                    'grey'],\n",
       "                'circle-stroke-width': generatePropertyExpression('interpolate', 'zoom', [[0,0.1], [18,5* 0.1]]),\n",
       "                'circle-opacity' : 1,\n",
       "                'circle-stroke-opacity' : 1\n",
       "            }\n",
       "        }, 'label');\n",
       "        \n",
       "        \n",
       "\n",
       "        // Popups\n",
       "        \n",
       "            var popupAction = 'mousemove',\n",
       "                popupSettings =  {\n",
       "                    closeButton: false,\n",
       "                    closeOnClick: false\n",
       "                };\n",
       "        \n",
       "\n",
       "        // Create a popup\n",
       "        var popup = new mapboxgl.Popup(popupSettings);\n",
       "\n",
       "        \n",
       "\n",
       "        var hoveredStateId = 0;\n",
       "        \n",
       "        // Show the popup on mouseover\n",
       "        map.on(popupAction, function(e) {\n",
       "            \n",
       "            var features = map.queryRenderedFeatures(e.point, {layers: ['circle', 'label'] });\n",
       "\n",
       "            if (features.length > 0) {\n",
       "                map.getCanvas().style.cursor = 'pointer';\n",
       "                var f = features[0];\n",
       "                newHoveredStateId = f.id;\n",
       "                if (newHoveredStateId != hoveredStateId) {\n",
       "                    map.removeFeatureState({source: 'data', id: hoveredStateId});\n",
       "                    hoveredStateId = newHoveredStateId;\n",
       "                }\n",
       "                map.setFeatureState({source: 'data', id: hoveredStateId}, { hover: true});\n",
       "                let popup_html = '<div><li><b>Location</b>: ' + f.geometry.coordinates[0].toPrecision(6) + \n",
       "                    ', ' + f.geometry.coordinates[1].toPrecision(6) + '</li>';\n",
       "\n",
       "                for (key in f.properties) {\n",
       "                    popup_html += '<li><b> ' + key + '</b>: ' + f.properties[key] + ' </li>'\n",
       "                }\n",
       "\n",
       "                popup_html += '</div>'\n",
       "                popup.setLngLat(e.lngLat)\n",
       "                    .setHTML(popup_html)\n",
       "                    .addTo(map);\n",
       "            }\n",
       "            else {\n",
       "                map.getCanvas().style.cursor = '';\n",
       "                popup.remove();\n",
       "                map.removeFeatureState({source: 'data', id: hoveredStateId});\n",
       "            }\n",
       "        });\n",
       "\n",
       "        \n",
       "        \n",
       "        // Fly to on click\n",
       "        map.on('click', 'circle', function(e) {\n",
       "            map.easeTo({\n",
       "                center: e.features[0].geometry.coordinates\n",
       "            });\n",
       "        });\n",
       "    });\n",
       "\n",
       "\n",
       "\n",
       "</script>\n",
       "\n",
       "<!-- add capability to export map or legend to image file -->\n",
       "\n",
       "\n",
       "</body>\n",
       "</html>\" style=\"width: 100%; height: 600px;\"></iframe>"
      ],
      "text/plain": [
       "<IPython.core.display.HTML object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "import math\n",
    "import numpy as np\n",
    "from mapboxgl.viz import *\n",
    "from mapboxgl.utils import df_to_geojson, create_radius_stops, scale_between\n",
    "from mapboxgl.utils import create_color_stops\n",
    "import pandas as pd\n",
    "\n",
    "data, columns = imgset.as_nested_lists()\n",
    "df = pd.DataFrame.from_records(data, index='timestamp', columns=columns)\n",
    "\n",
    "#Insert your mapbox token here\n",
    "token = 'pk.eyJ1IjoibWljYXNlbnNlIiwiYSI6ImNqYWx5dWNteTJ3cWYzMnBicmZid3g2YzcifQ.Zrq9t7GYocBtBzYyT3P4sw'\n",
    "color_property = 'dls-yaw'\n",
    "num_color_classes = 8\n",
    "\n",
    "min_val = df[color_property].min()\n",
    "max_val = df[color_property].max()\n",
    "\n",
    "import jenkspy\n",
    "breaks = jenkspy.jenks_breaks(df[color_property], nb_class=num_color_classes)\n",
    "\n",
    "color_stops = create_color_stops(breaks,colors='YlOrRd')\n",
    "geojson_data = df_to_geojson(df,columns[3:],lat='latitude',lon='longitude')\n",
    "\n",
    "viz = CircleViz(geojson_data, access_token=token, color_property=color_property,\n",
    "                color_stops=color_stops,\n",
    "                center=[df['longitude'].median(),df['latitude'].median()], \n",
    "                zoom=16, height='600px',\n",
    "                style='mapbox://styles/mapbox/satellite-streets-v9')\n",
    "viz.show()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Define which warp method to use\n",
    "For newer data sets with RigRelatives tags (images captured with RedEdge version 3.4.0 or greater with a valid calibration load, see https://support.micasense.com/hc/en-us/articles/360005428953-Updating-RedEdge-for-Pix4Dfields), we can use the RigRelatives for a simple alignment.\n",
    "\n",
    "For sets without those tags, or sets that require a RigRelatives optimization, we can go through the Alignment.ipynb notebook and get a set of `warp_matrices` that we can use here to align."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [],
   "source": [
    "from numpy import array\n",
    "from numpy import float32\n",
    "\n",
    "# Set warp_matrices to none to align using RigRelatives\n",
    "# Or\n",
    "# Use the warp_matrices derived from the Alignment Tutorial for this RedEdge set without RigRelatives\n",
    "warp_matrices = [array([[ 1.0010375e+00, -3.9708032e-03, -8.9111652e+00],\n",
    "       [ 1.6603530e-03,  1.0004413e+00,  4.3942509e+01],\n",
    "       [-4.3470865e-07, -2.2260615e-06,  1.0000000e+00]], dtype=float32), array([[1., 0., 0.],\n",
    "       [0., 1., 0.],\n",
    "       [0., 0., 1.]], dtype=float32), array([[ 9.9335790e-01, -4.7343201e-03, -1.4426430e-01],\n",
    "       [ 3.0201012e-03,  9.9259055e-01,  3.3995308e+01],\n",
    "       [-7.0813246e-07, -1.2657903e-06,  1.0000000e+00]], dtype=float32), array([[ 9.9653125e-01, -2.1419618e-03, -4.2702127e+00],\n",
    "       [ 7.9199986e-04,  9.9769008e-01,  5.2042053e+01],\n",
    "       [-9.7712336e-07, -4.9935232e-07,  1.0000000e+00]], dtype=float32), array([[ 9.9848622e-01, -3.2853740e-03, -9.9952917e+00],\n",
    "       [ 1.8229613e-03,  9.9786657e-01,  1.7976559e+01],\n",
    "       [-3.2802632e-07, -1.0995809e-06,  1.0000000e+00]], dtype=float32), array([[ 6.44834781e-02,  2.69729233e-04,  1.44456978e+01],\n",
    "       [-2.84955924e-04,  6.46989490e-02,  1.00155299e+01],\n",
    "       [-1.43807777e-06,  8.37883807e-07,  1.00000000e+00]])]"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Align images and save each capture to a layered tiff file"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "application/vnd.jupyter.widget-view+json": {
       "model_id": "660697aa2278495b9cb150c7d6cf9d14",
       "version_major": 2,
       "version_minor": 0
      },
      "text/plain": [
       "FloatProgress(value=0.0, description='Saving', layout=Layout(width='100%'), max=1.0)"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Saving time: 0:04:48.690967\n",
      "Alignment+Saving rate: 0.73 images per second\n"
     ]
    }
   ],
   "source": [
    "import exiftool\n",
    "import datetime\n",
    "## This progress widget is used for display of the long-running process\n",
    "f2 = FloatProgress(min=0, max=1, layout=Layout(width='100%'), description=\"Saving\")\n",
    "display(f2)\n",
    "def update_f2(val):\n",
    "    f2.value=val\n",
    "\n",
    "if not os.path.exists(outputPath):\n",
    "    os.makedirs(outputPath)\n",
    "if generateThumbnails and not os.path.exists(thumbnailPath):\n",
    "    os.makedirs(thumbnailPath)\n",
    "\n",
    "# Save out geojson data so we can open the image capture locations in our GIS\n",
    "with open(os.path.join(outputPath,'imageSet.json'),'w') as f:\n",
    "    f.write(str(geojson_data))\n",
    "    \n",
    "try:\n",
    "    irradiance = panel_irradiance+[0]\n",
    "except NameError:\n",
    "    irradiance = None\n",
    "\n",
    "start = datetime.datetime.now()\n",
    "for i,capture in enumerate(imgset.captures):\n",
    "    imageName = os.path.basename(capture.images[0].path.replace('_1', '_RGBNET').replace('.tif', ''))\n",
    "    outputFilename = imageName+'.tif'\n",
    "    thumbnailFilename = imageName+'.jpg'\n",
    "    fullOutputPath = os.path.join(outputPath, outputFilename)\n",
    "    fullThumbnailPath= os.path.join(thumbnailPath, thumbnailFilename)\n",
    "    if (not os.path.exists(fullOutputPath)) or overwrite:\n",
    "        if(len(capture.images) == len(imgset.captures[0].images)):\n",
    "            capture.create_aligned_capture(irradiance_list=irradiance, warp_matrices=warp_matrices)\n",
    "            capture.save_capture_as_stack(fullOutputPath)\n",
    "            if generateThumbnails:\n",
    "                capture.save_capture_as_rgb(fullThumbnailPath)\n",
    "    capture.clear_image_data()\n",
    "    update_f2(float(i)/float(len(imgset.captures)))\n",
    "update_f2(1.0)\n",
    "end = datetime.datetime.now()\n",
    "\n",
    "print(\"Saving time: {}\".format(end-start))\n",
    "print(\"Alignment+Saving rate: {:.2f} images per second\".format(float(len(imgset.captures))/float((end-start).total_seconds())))"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Use Exiftool from the command line to write metadata to images"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0000_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0001_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0002_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0003_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0004_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0005_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0006_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0007_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0008_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0009_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0010_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0011_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0012_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0013_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0014_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0015_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0016_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0017_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0018_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0019_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0020_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0021_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0022_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0023_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0040_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0041_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0042_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0043_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0044_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0045_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0046_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0047_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0048_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0049_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0050_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0051_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0052_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0053_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0054_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0055_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0056_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0057_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0058_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0064_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0065_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0066_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0067_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0068_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0069_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0070_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0071_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0072_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0073_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0074_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0075_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0076_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0077_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0078_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0079_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0080_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0081_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0082_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0083_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0084_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0085_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0086_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0087_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0088_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0089_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0090_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0091_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0092_RGBNET.tif\n",
      "Write exif: /dm/micasense/0000SET/../stacks/IMG_0093_RGBNET.tif\n"
     ]
    }
   ],
   "source": [
    "import subprocess\n",
    "\n",
    "## Preserves important exif information such as GPS, DateTimeOriginal, Focal Length, Camera Make, Camera Model\n",
    "old_dir = os.getcwd()\n",
    "os.chdir(outputPath)\n",
    "\n",
    "for i,capture in enumerate(imgset.captures):\n",
    "    raw_image = capture.images[0].path\n",
    "    stacked_image = os.path.join(outputPath, os.path.basename(capture.images[0].path.replace('_1', '_RGBNET')))\n",
    "    print(\"Write exif: {}\".format(stacked_image))\n",
    "\n",
    "    try:\n",
    "        subprocess.call(['exiftool','-m','-ifd1:all=','-overwrite_original','-TagsFromFile',raw_image,stacked_image])\n",
    "    finally:\n",
    "        os.chdir(old_dir)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
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