Task list from now to end of the Spring 2017 semester

[kdahlquist]

For @anuvarsh

• Allow user to set maximum weight value against which all other weights are normalized #264, user defined normalization factor (priority 0)
• Checklist for v2.0.x release #422, add release notes to this issue for your features/bug fixes
• Preferences on css tags, string initialization, variable declarations, and function declarations. #425, preferences

For @yshin4 (generally in the vein of tidying up the graph layout features/bugs)

• Reduce white space one either side of gene label #333, reduce white space on either side of label (CLOSED)
• Long node labels mess up self-regulatory arrows #318, long node labels mess up self-regulatory arrows (priority 0) because these two seem related
• Make the arrowheads larger for unweighted and thinnest weighted edges: fix tips going behind nodes #392, make arrowheads bigger for thinnest black, grey, magenta, and cyan arrows (priority 0) size change is done, but need to adjust so tip of point doesn't go behind node box
• Blunt markers are not centered especially for thick edges #188, another edge marker-related issue (priority 0.5)
• Checklist for v2.0.x release #422, add release notes to this issue for your features/bug fixes
• Preferences on css tags, string initialization, variable declarations, and function declarations. #425, preferences

For @mihirsamdarshi

• Network loads with black edges and cyan blunt end markers #355, bug where network loads with black edges and cyan blunt end markers due to real number weight values in sheet called "network" instead of "network_optimized_weights" (priority 0)
• Accessibility of GRNsight to color blind users #381, update color scheme to be color blind-friendly (priority 0.5)
• Checklist for v2.0.x release #422, add release notes to this issue for your features/bug fixes

For @eileenchoe

• Slider Display Values do not change after loading a file #364 slider display value bug (priority 0)
• Missing Value Error is not being caught when there are missing values in the matrix #417 missing value error (priority 0.5)
• Need to return error when user uploads blank file #428, semantic test for blank file (priority 0.5)
• Add "syntactic" tests for SIF format #362, syntactic tests for SIF (reset to priority 0.5)
• Checklist for v2.0.x release #422, add release notes to this issue for your features/bug fixes

For @ebachoura

• Slider Display Values do not change after loading a file #364 slider display value bug (priority 0)
• Missing Value Error is not being caught when there are missing values in the matrix #417 missing value error (priority 0.5)
• Add "syntactic" tests for graphml format #363, syntactic tests for GraphML (reset to priority 0.5); set up meeting with @anuvarsh to discuss test files
• Checklist for v2.0.x release #422, add release notes to this issue for your features/bug fixes
• Preferences on css tags, string initialization, variable declarations, and function declarations. #425, preferences

For @NAnguiano

• Implement preference for hard or adaptive drafting board size #396 : Fixed/adaptive bounding box tweaks
• Implement viewport scrolling and drafting board scaling #399 : Scrolling/Zooming Tweaks
• Changes to UI to support new features #411 : UI tweaks
• Weights on weighted graphs congregate in the upper left hand corner when "always show weights" is selected #443: Bug with weights appearing in the upper left hand corner when "always show weights" is selected
• Investigate hierarchical layout #290, work on hierarchical layout (priority 0.5)
• Checklist for v2.0.x release #422, add release notes to this issue for your features/bug fixes

For @kdahlquist

• Implement automatic discovery of initial drafting board and viewport size #395 review requested, automatic detection of browser window size
• Implement preference for hard or adaptive drafting board size #396, Implement viewport scrolling and drafting board scaling #399, Changes to UI to support new features #411, review as changes become available on beta
• Website updates to News, Publications, People pages #418, upload poster to slideshare, update publication and news web pages
• Checklist for v2.0.x release #422, add release notes to this issue for your features/bug fixes; write documentation

For @dondi

• Implement preference for hard or adaptive drafting board size #396, Implement viewport scrolling and drafting board scaling #399, Changes to UI to support new features #411, review as changes become available on beta
• Semantic checker needs to be integrated into SIF and GraphML importers #386 review requested, integration of semantic checker
• Browser version backwards compatibility question #429, question about browser backwards compatibility

[dondi]

@anuvarsh has made some progress and will have time until next Wednesday, after which she needs to focus on MCAT. The goal we have established is for her to have the functionality working with refresh. We will look into making normalization adjustments without refresh after that, for the remainder of the semester.

[dondi]

@mihirsamdarshi was momentarily stuck but @dondi advised him to keep his developer console open so he can see any errors that were emerging, which was what was happening in this case. Upon seeing the error, this immediate issue was fixed during the meeting and he can now proceed.

He is projected to be finished with #355 well before the next technical meeting, so @dondi asked him to proceed to #381 once #355 has been finished, pull-requested, reviewed, and merged.

[dondi]

@eileenchoe is on the verge of issuing a pull request for #362, which @dondi will review. She also has a general approach (similar to @ebachoura's) for handling empty files (#428).

[dondi]

For @ebachoura, @dondi walked through the process involved in implementing #363, ranging from the tests to how to handle the err argument passed by the third-party parseString function. @eileenchoe's existing unit tests for her SIF syntactic checker can serve as a pattern for his own unit tests.

[dondi]

@dondi relayed to @eileenchoe and @ebachoura that we will be entering a swarm phase to help @NAnguiano with QA-ing her 402 work. At certain milestones, @NAnguiano can ask @eileenchoe and @ebachoura to do a thorough test with all of the combinations for the zooming/bounding box/adaptive settings that she is implementing. @eileenchoe and @ebachoura can report issues and potentially offer fixes to help polish the work.

[kdahlquist]

Updated task list for @ebachoura and @eileenchoe to assign #364 as per @NAnguiano's request. Downgraded their other tasks in the meantime.

[NAnguiano]

Updated task list to add #417 to @ebachoura and @eileenchoe.

[kdahlquist]

@NAnguiano and @yshin4, any progress to report after today's work session?

[dondi]

#417 has been tabled to priority 0.5 so that @eileenchoe and @ebachoura can focus on debugging the combinatorics of @NAnguiano's full feature set.

[dondi]

@NAnguiano expects a new pull request for her features tonight.

[kdahlquist]

I closed #396, #399, and #411, opening a slew of more granular issues instead. They have been all marked with a priority level and whether they are for the upcoming release. I'm not going to try and update this issue right now. So, @NAnguiano, just please apply the relevant label filter to see what needs to be fixed immediately.

[kdahlquist]

I'm closing this. All open tasks that need to be completed for the next release are labeled as such. Further notes will go on issue #422: checklist for release.