Task List for Weeks of 2/9 and 2/15

[kdahlquist]

For @anuvarsh

• Option for showing or hiding all weights #285, finalize refresh issue with showing/hiding weights (priority 0)
• Allow user to set maximum weight value against which all other weights are normalized #264, user defined normalization factor (after above completed, or if need a break from it)

For @yshin4 (generally in the vein of tidying up the graph layout features/bugs)

• Create a warning for Cytoscape Graph Statistics Report Failure #343, verify and then close this one
• Reduce white space one either side of gene label #333, reduce white space on either side of label (priority 0)
• Long node labels mess up self-regulatory arrows #318, long node labels mess up self-regulatory arrows (priority 0.5) because these two seem related

For @mihirsamdarshi

• Use forks and pull requests to avoid losing work due to merge conflicts #382, needs to sign off on this so we can close issue
• Semantic checker needs to be integrated into SIF and GraphML importers #386, semantic checker needs to be integrated into SIF and GraphML importers (priority 0)
• Network loads with black edges and cyan blunt end markers #355, but where network loads with black edges and cyan blunt end markers due to real number weight values in sheet called "network" instead of "network_optimized_weights" (priority 0.5)

For @eileenchoe

• Add "syntactic" tests for SIF format #362, syntactic tests for SIF (priority 0)
• Update state diagram/automatic client-side test generator #326, write program to generate state diagram (with @ebachoura , priority 0.5)
• npm install GRNsight #361, finalize pending decisions by @kdahlquist and @dondi (priority 0.5)

For @ebachoura

• Use forks and pull requests to avoid losing work due to merge conflicts #382, needs to sign off on this so we can close issue
• Add "syntactic" tests for graphml format #363, syntactic tests for GraphML (priority 0)
• Update state diagram/automatic client-side test generator #326, write program to generate state diagram (with @eileenchoe , priority 0.5)
• npm install GRNsight #361, finalize pending decisions by @kdahlquist and @dondi (priority 0.5)

For @NAnguiano

• Make bounding box/zoom/scrolling/size toggle-able #345, design decisions about this will be made on 2/13, after which new issues will be opened for implementation and this one can be closed (priority 0)
• Implement automatic discovery of initial drafting board and viewport size #395 Implement automatic discovery of initial drafting board and viewport size (priority 0)
• Implement preference to change viewport size between small, medium, large #397 Implement preference to change viewport size between small, medium, large (priority 0)
• Investigate hierarchical layout #290, work on hierarchical layout (priority 0.5)

For @kdahlquist

• Southern California Conference for Systems Biology #360, upload poster to slideshare, update publication and news web pages
• Create "How to cite GRNsight" section on About page #387, review requested

For @dondi

• npm install GRNsight #361, @kdahlquist wasn't able to remember what the final decision was on this one, @dondi needs to give direction

[kdahlquist]

remaining open issues moved to #403.