htdocs update (master)

Author: DiamondLightSource-build-server

documentation/library_reference/algorithms/dials.algorithms.symmetry.html

@@ -856,6 +856,32 @@
 <dd></dd></dl>
 
 <p id="module-dials.algorithms.symmetry.cosym.target">Target function for cosym analysis.</p>
+<dl class="py class">
+<dt class="sig sig-object py" id="dials.algorithms.symmetry.cosym.target.LightArray">
+<span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">dials.algorithms.symmetry.cosym.target.</span></span><span class="sig-name descname"><span class="pre">LightArray</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sigmas</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../../_modules/dials/algorithms/symmetry/cosym/target.html#LightArray"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#dials.algorithms.symmetry.cosym.target.LightArray" title="Link to this definition">¶</a></dt>
+<dd><p>Bases: <a class="reference external" href="https://docs.python.org/3/library/functions.html#object" title="(in Python v3.14)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
+<dl class="py method">
+<dt class="sig sig-object py" id="dials.algorithms.symmetry.cosym.target.LightArray.__init__">
+<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">data</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sigmas</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../../_modules/dials/algorithms/symmetry/cosym/target.html#LightArray.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#dials.algorithms.symmetry.cosym.target.LightArray.__init__" title="Link to this definition">¶</a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="dials.algorithms.symmetry.cosym.target.LightArray.data">
+<span class="sig-name descname"><span class="pre">data</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../../_modules/dials/algorithms/symmetry/cosym/target.html#LightArray.data"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#dials.algorithms.symmetry.cosym.target.LightArray.data" title="Link to this definition">¶</a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="dials.algorithms.symmetry.cosym.target.LightArray.sigmas">
+<span class="sig-name descname"><span class="pre">sigmas</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../../_modules/dials/algorithms/symmetry/cosym/target.html#LightArray.sigmas"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#dials.algorithms.symmetry.cosym.target.LightArray.sigmas" title="Link to this definition">¶</a></dt>
+<dd></dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="dials.algorithms.symmetry.cosym.target.LightArray.size">
+<span class="sig-name descname"><span class="pre">size</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../../../_modules/dials/algorithms/symmetry/cosym/target.html#LightArray.size"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#dials.algorithms.symmetry.cosym.target.LightArray.size" title="Link to this definition">¶</a></dt>
+<dd></dd></dl>
+
+</dd></dl>
+
 <dl class="py class">
 <dt class="sig sig-object py" id="dials.algorithms.symmetry.cosym.target.Target">
 <span class="property"><span class="k"><span class="pre">class</span></span><span class="w"> </span></span><span class="sig-prename descclassname"><span class="pre">dials.algorithms.symmetry.cosym.target.</span></span><span class="sig-name descname"><span class="pre">Target</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">intensities</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">lattice_ids</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">weights</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">min_pairs</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">3</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">lattice_group</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dimensions</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">nproc</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cc_weights</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../../../_modules/dials/algorithms/symmetry/cosym/target.html#Target"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#dials.algorithms.symmetry.cosym.target.Target" title="Link to this definition">¶</a></dt>

documentation/library_reference/algorithms/index.html

@@ -185,6 +185,7 @@ <h1>Algorithms<a class="headerlink" href="#algorithms" title="Link to this headi
 <li class="toctree-l2"><a class="reference internal" href="dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.SymmetryAnalysis"><code class="docutils literal notranslate"><span class="pre">SymmetryAnalysis</span></code></a></li>
 <li class="toctree-l2"><a class="reference internal" href="dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.change_of_basis_op_to_best_cell"><code class="docutils literal notranslate"><span class="pre">change_of_basis_op_to_best_cell()</span></code></a></li>
 <li class="toctree-l2"><a class="reference internal" href="dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.extract_reference_intensities"><code class="docutils literal notranslate"><span class="pre">extract_reference_intensities()</span></code></a></li>
+<li class="toctree-l2"><a class="reference internal" href="dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.target.LightArray"><code class="docutils literal notranslate"><span class="pre">LightArray</span></code></a></li>
 <li class="toctree-l2"><a class="reference internal" href="dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.target.Target"><code class="docutils literal notranslate"><span class="pre">Target</span></code></a></li>
 <li class="toctree-l2"><a class="reference internal" href="dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.engine.lbfgs_with_curvs"><code class="docutils literal notranslate"><span class="pre">lbfgs_with_curvs</span></code></a></li>
 <li class="toctree-l2"><a class="reference internal" href="dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.engine.minimize_scipy"><code class="docutils literal notranslate"><span class="pre">minimize_scipy()</span></code></a></li>

genindex.html

@@ -240,6 +240,8 @@ <h2 id="_">_</h2>
         <li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.ScoreSymmetryElement.__init__">(dials.algorithms.symmetry.cosym.ScoreSymmetryElement method)</a>
 </li>
         <li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.SymmetryAnalysis.__init__">(dials.algorithms.symmetry.cosym.SymmetryAnalysis method)</a>
+</li>
+        <li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.target.LightArray.__init__">(dials.algorithms.symmetry.cosym.target.LightArray method)</a>
 </li>
         <li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.target.Target.__init__">(dials.algorithms.symmetry.cosym.target.Target method)</a>
 </li>
@@ -828,6 +830,8 @@ <h2 id="D">D</h2>
         <li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.ProfileValidatorExecutor.data">(dials.algorithms.integration.integrator.ProfileValidatorExecutor method)</a>
 </li>
         <li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.ReflectionManager.data">(dials.algorithms.integration.integrator.ReflectionManager method)</a>
+</li>
+        <li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.target.LightArray.data">(dials.algorithms.symmetry.cosym.target.LightArray method)</a>
 </li>
         <li><a href="documentation/library_reference/dxtbx/imageset.html#dxtbx.imageset.ImageSet.data">(dxtbx.imageset.ImageSet method)</a>
 </li>
@@ -2279,13 +2283,15 @@ <h2 id="L">L</h2>
 </li>
       <li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.target.LeastSquaresPositionalResidualWithRmsdCutoffSparse">LeastSquaresPositionalResidualWithRmsdCutoffSparse (class in dials.algorithms.refinement.target)</a>
 </li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.target_stills.LeastSquaresStillsResidualWithRmsdCutoff">LeastSquaresStillsResidualWithRmsdCutoff (class in dials.algorithms.refinement.target_stills)</a>
 </li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.target_stills.LeastSquaresStillsResidualWithRmsdCutoffSparse">LeastSquaresStillsResidualWithRmsdCutoffSparse (class in dials.algorithms.refinement.target_stills)</a>
 </li>
       <li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.engine.LevenbergMarquardtIterations">LevenbergMarquardtIterations (class in dials.algorithms.refinement.engine)</a>
+</li>
+      <li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.target.LightArray">LightArray (class in dials.algorithms.symmetry.cosym.target)</a>
 </li>
       <li><a href="documentation/library_reference/algorithms/dials.algorithms.scaling.html#dials.algorithms.scaling.model.model.ArrayScalingModel.limit_image_range">limit_image_range() (dials.algorithms.scaling.model.model.ArrayScalingModel method)</a>
 
@@ -3188,17 +3194,19 @@ <h2 id="S">S</h2>
 </li>
       <li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.indexer.Indexer.setup_indexing">setup_indexing() (dials.algorithms.indexing.indexer.Indexer method)</a>
 </li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="documentation/library_reference/algorithms/dials.algorithms.refinement.html#dials.algorithms.refinement.engine.LevenbergMarquardtIterations.setup_mu">setup_mu() (dials.algorithms.refinement.engine.LevenbergMarquardtIterations method)</a>
 </li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="documentation/library_reference/algorithms/dials.algorithms.integration.html#dials.algorithms.integration.integrator.JobList.shoebox_memory">shoebox_memory() (dials.algorithms.integration.integrator.JobList method)</a>
 </li>
       <li><a href="documentation/library_reference/algorithms/dials.algorithms.spot_finding.html#dials.algorithms.spot_finding.finder.shoeboxes_to_reflection_table">shoeboxes_to_reflection_table() (in module dials.algorithms.spot_finding.finder)</a>
 </li>
       <li><a href="documentation/library_reference/dxtbx/crystal.html#dxtbx.model.Crystal.show">show() (dxtbx.model.Crystal method)</a>
 </li>
       <li><a href="documentation/library_reference/algorithms/dials.algorithms.indexing.html#dials.algorithms.indexing.indexer.Indexer.show_experiments">show_experiments() (dials.algorithms.indexing.indexer.Indexer method)</a>
+</li>
+      <li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.target.LightArray.sigmas">sigmas() (dials.algorithms.symmetry.cosym.target.LightArray method)</a>
 </li>
       <li><a href="documentation/library_reference/dxtbx/beam.html#dxtbx.model.beam.BeamFactory.simple">simple() (dxtbx.model.beam.BeamFactory static method)</a>
 
@@ -3224,9 +3232,11 @@ <h2 id="S">S</h2>
 </li>
       <li><a href="documentation/library_reference/dxtbx/scan.html#dxtbx.model.scan.ScanFactory.single_file">single_file() (dxtbx.model.scan.ScanFactory static method)</a>
 </li>
-      <li><a href="documentation/library_reference/array_family/index.html#dials.array_family.flex.reflection_table.size">size() (dials.array_family.flex.reflection_table method)</a>
+      <li><a href="documentation/library_reference/algorithms/dials.algorithms.symmetry.html#dials.algorithms.symmetry.cosym.target.LightArray.size">size() (dials.algorithms.symmetry.cosym.target.LightArray method)</a>
 
       <ul>
+        <li><a href="documentation/library_reference/array_family/index.html#dials.array_family.flex.reflection_table.size">(dials.array_family.flex.reflection_table method)</a>
+</li>
         <li><a href="documentation/library_reference/dxtbx/imageset.html#dxtbx.imageset.ImageSet.size">(dxtbx.imageset.ImageSet method)</a>
 </li>
       </ul></li>