From f172a5e1853cbc8e8a2563f9077c0bb2e8148a98 Mon Sep 17 00:00:00 2001
From: David Lougheed <david.lougheed@gmail.com>
Date: Mon, 21 Oct 2024 08:05:33 -0400
Subject: [PATCH] debug

---
 strkit/mi/longtr.py | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/strkit/mi/longtr.py b/strkit/mi/longtr.py
index d692b28..89d7573 100644
--- a/strkit/mi/longtr.py
+++ b/strkit/mi/longtr.py
@@ -24,6 +24,8 @@ def calculate_contig(self, contig: str) -> MIContigResult:
 
         # We want all common loci, so loop through the child and then look for the loci in the parent calls
 
+        print(self._loci_dict)
+
         for cv in cvf.fetch(contig):
             mv = next(mvf.fetch(contig, cv.start, cv.stop), None)
             fv = next(fvf.fetch(contig, cv.start, cv.stop), None)
@@ -33,6 +35,7 @@ def calculate_contig(self, contig: str) -> MIContigResult:
             k = (contig, cv.start, cv.stop)
 
             if self.should_skip_locus(*k):
+                print("should skip", k)
                 continue
 
             cr.seen_locus(*k)