Update with 'dsadmin.profile_init'

Author: StuartWheater

azure-pipelines.yml

@@ -221,7 +221,9 @@ jobs:
 
       sleep 60
 
-      R -q -e "library(opalr); opal <- opal.login('administrator','datashield_test&', url='http://localhost:8080/'); dsadmin.set_option(opal, 'default.datashield.privacyControlLevel', 'permissive'); opal.logout(opal)"
+      R -q -e "library(opalr); opal <- opal.login('administrator', 'datashield_test&', url='http://localhost:8080/'); dsadmin.profile_init(opal, name = 'default', packages = c('dsBase', 'dsTidyverse', 'resourcer')); opal.logout(opal)"
+
+      R -q -e "library(opalr); opal <- opal.login('administrator', 'datashield_test&', url='http://localhost:8080/'); dsadmin.set_option(opal, 'default.datashield.privacyControlLevel', 'permissive'); opal.logout(opal)"
 
     workingDirectory: $(Pipeline.Workspace)/dsBaseClient/tests/testthat/data_files
     displayName: 'Install dsBase to Opal, as set disclosure test options'

opal_azure-pipelines.yml

@@ -221,7 +221,9 @@ jobs:
 
       sleep 60
 
-      R -q -e "library(opalr); opal <- opal.login('administrator','datashield_test&', url='http://localhost:8080/'); dsadmin.set_option(opal, 'default.datashield.privacyControlLevel', 'permissive'); opal.logout(opal)"
+      R -q -e "library(opalr); opal <- opal.login('administrator', 'datashield_test&', url='http://localhost:8080/'); dsadmin.profile_init(opal, name = 'default', packages = c('dsBase', 'dsTidyverse', 'resourcer')); opal.logout(opal)"
+
+      R -q -e "library(opalr); opal <- opal.login('administrator', 'datashield_test&', url='http://localhost:8080/'); dsadmin.set_option(opal, 'default.datashield.privacyControlLevel', 'permissive'); opal.logout(opal)"
 
     workingDirectory: $(Pipeline.Workspace)/dsBaseClient/tests/testthat/data_files
     displayName: 'Install dsBase to Opal, as set disclosure test options'

tests/docker/armadillo/standard/config/application.yml

@@ -14,11 +14,12 @@ armadillo:
   # oidc-admin-user: user@yourdomain.org
   profiles:
     - name: default
-      image: datashield/rock-quebrada-lamda-permissive:latest
+      image: datashield/rock_citest-permissive:latest
       port: 8085
       host: default
       package-whitelist: # Packages for 'permissive'
         - dsBase
+        - dsTidyverse
         - resourcer
       function-blacklist: [ ]
       options:
@@ -66,8 +67,13 @@ stdout.log.path: '/logs/armadillo.log'
 
 logging:
   level:
-    root: INFO
+    root: "warn"
     ## change to DEBUG to have more details, typically when developing
-    org.molgenis: INFO
+    org.molgenis: "warn"
     ## Don't log upload data
-    org.apache.coyote.http11.Http11InputBuffer: INFO
+    org.apache.coyote.http11.Http11InputBuffer: "warn"
+    ## SpringFramework
+    org.springframework.boot: "warn"
+    org.springframework.web: "warn"
+    org.springframework.core: "warn"
+    org.springframework.codex: "warn"