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cluster.json
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{
"__default__" :
{
"time" : "00:15",
"cpu": 1,
"email" : "[email protected]",
"EmailNotice": "N",
"MaxMem": 16384,
"queue" : "short"
},
"merge_fastqs" :
{
"time" : "0:30",
"cpu" : 1
},
"fastqc":
{
"time" : "1:00",
"cpu" : 1
},
"clean_fastq":
{
"time" : "1:00",
"cpu" : 6
},
"align":
{
"time" : "04:00",
"MaxMem": 32768,
"cpu" : 5,
"queue" : "medium"
},
"sort_bam":
{
"time" : "01:00",
"MaxMem": 32768,
"cpu" : 5
},
"index_bam":
{
"time" : "00:20"
},
"flagstat_bam":
{
"time" : "00:30"
},
"down_sample":
{
"time" : "01:00",
"cpu" : 5
},
"phantom_peak_qual":
{
"time": "01:00",
"cpu" : 4
},
"call_peaks_macs1":
{
"time" : "02:30",
"queue" : "medium"
},
"call_peaks_macs2":
{ "time" : "02:00",
"queue" : "medium"
},
"make_bigwigs":
{
"time" : "03:00",
"MaxMem": 32768,
"cpu" : 5,
"queue" : "medium"
},
"make_inputSubtract_bigwigs":
{
"time" : "03:00",
"MaxMem": 32768,
"cpu" : 5,
"queue" : "medium"
},
"multiQC" :
{
"time" : "00:10"
},
"bam2bed" :
{
"time": "01:00"
},
"make_table":
{
"time": "00:10"
},
"chromHmm_binarize":
{
"time": "4:00",
"queue" : "medium"
},
"chromHmm_learn":
{
"time": "24:00",
"cpu": 10,
"queue": "medium"
},
"superEnhancer":
{
"time": "8:00",
"cpu": 4,
"queue" : "medium"
}
}