From fc94cb15e27de92af9a9c7d01cf1920118434b9f Mon Sep 17 00:00:00 2001
From: liubing <shixi_liubing@staff.weibo.com>
Date: Fri, 24 Nov 2017 16:26:30 +0800
Subject: [PATCH] add docker env

---
 Dockerfile | 41 +++++++++++++++++++++++++++++++++++++++++
 1 file changed, 41 insertions(+)
 create mode 100644 Dockerfile

diff --git a/Dockerfile b/Dockerfile
new file mode 100644
index 000000000..6a1bb355a
--- /dev/null
+++ b/Dockerfile
@@ -0,0 +1,41 @@
+FROM ubuntu:16.04
+MAINTAINER Bing Liu liub@mail.bnu.edu.cn
+
+RUN apt-get update
+RUN apt-get -y install git wget gcc make automake autoconf cmake bzip2 g++
+
+RUN git clone https://github.com/cosmo-team/cosmo/
+RUN cd cosmo/ && git checkout VARI && mkdir 3rd_party_src && mkdir -p 3rd_party_inst/boost && cd 3rd_party_src
+RUN cd /cosmo/3rd_party_src && git clone https://github.com/refresh-bio/KMC \
+	&& git clone https://github.com/cosmo-team/sdsl-lite.git \
+	&& git clone https://github.com/stxxl/stxxl \
+	&& git clone https://github.com/eile/tclap
+
+RUN cd /cosmo/3rd_party_src && wget http://sourceforge.net/projects/boost/files/boost/1.54.0/boost_1_54_0.tar.bz2 > /dev/null 2>&1 && \
+	tar -xjf boost_1_54_0.tar.bz2
+
+RUN cd /cosmo/3rd_party_src/boost_1_54_0 &&  ./bootstrap.sh --prefix=../../3rd_party_inst/boost
+RUN cd /cosmo/3rd_party_src/boost_1_54_0 && ./b2 install; exit 0
+RUN cd /cosmo/3rd_party_src/sdsl-lite/ && \
+	git rm -rf external/googletest && git rm -rf external/libdivsufsort && \
+	git submodule add -f https://github.com/google/googletest.git external/googletest && \
+	git submodule add -f https://github.com/simongog/libdivsufsort.git external/libdivsufsort && \
+	sed '26c add_subdirectory(googletest/googletest)' external/CMakeLists.txt >tmp && mv tmp ./external/CMakeLists.txt && \
+	sh install.sh /cosmo/3rd_party_inst/
+
+RUN cd /cosmo/3rd_party_src/stxxl && mkdir build && cd build && \
+	cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/cosmo/3rd_party_inst/ -DBUILD_STATIC_LIBS=ON && \
+	make && make install
+
+RUN cd /cosmo/3rd_party_src/KMC && make && cd ..
+
+RUN cd /cosmo/3rd_party_src/tclap/ && autoreconf -fvi && ./configure --prefix=/cosmo/3rd_party_inst/ && make && make install; exit 0
+RUN cd /cosmo/ && make
+
+ENV LD_LIBRARY_PATH /cosmo/3rd_party_inst/boost/lib:$LD_LIBRARY_PATH
+ENV PATH /cosmo:$PATH
+
+
+RUN cd ~ && mkdir data
+
+VOLUME data
\ No newline at end of file