Variable order de Bruijn Graph implementation

[amatur]

Does cosmo/vari have a working variable-order de Bruijn graph implementation? I was able to build succinct de Bruijn graph using cosmo (not variable order) with KMC2 input, but could not make it work with variable order. It looks like it has an option to build cosmo in variable order with DSK input, but it does not work for me.

[alexbowe]

Hi @amatur, sorry for the slow reply. I haven't checked GitHub for a while (work gets in the way). It might be worth using the code from the tag I used before submitting the variable order paper, as I'm not sure if vari maintained support for that.

Apologies for the state of the repo. Please let me know if you have any trouble, and if you are still looking for a solution to this. If I get some interest, I will dedicate some time to cleaning things up and working towards a 1.0 release.

Thanks!