ui

Lineage Curation UI

Web interface for phylogenetic lineage curation.

Quick Start

Prerequisites: JSONL file (.jsonl.gz) - see main README for MAT conversion.

cd linolium
npm run install-all && npm run build
./run-prod.sh /path/to/your/data.jsonl.gz

Open http://localhost:3000

Manual Launch

cd linolium
# Backend
cd taxonium_backend
node server.js --port 8001 --data_file /path/to/data.jsonl.gz

# Frontend (separate terminal)
cd ..
npm run serve

Development

cd linolium
npm run dev-with-backend    # Hot reload
npm run rebuild-component   # Rebuild after changes
npm run clean              # Clean artifacts

Structure

ui/
└── linolium/                   # Main application
    ├── taxonium_component/     # React components  
    ├── taxonium_backend/       # API server
    ├── taxonium_data_handling/ # Data utilities
    └── run-prod.sh            # Launch script

Features

• Hierarchical lineage visualization
• Review proposed lineages (from Autolin)
• Real-time editing (merge, split, reassign)
• JSONL/TSV export