pip check failed for PY3.12 + NP1

[njzjz]

Solution to issue cannot be found in the documentation.

• I checked the documentation.

Issue

Run

mamba create -n mendeleev-np1 mendeleev=0.20.1 python=3.12 "numpy<2" pip -y
pip check

Got

mendeleev 0.20.1 has requirement numpy<3.0,>=2.0; python_version >= "3.12", but you have numpy 1.26.4.

Installed packages

# packages in environment at /home/jz748/anaconda3/envs/mendeleev-np1:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
annotated-types           0.7.0              pyhd8ed1ab_1    conda-forge
bzip2                     1.0.8                h4bc722e_7    conda-forge
ca-certificates           2024.12.14           hbcca054_0    conda-forge
colorama                  0.4.6              pyhd8ed1ab_1    conda-forge
deprecated                1.2.15             pyhd8ed1ab_1    conda-forge
greenlet                  3.1.1           py312h2ec8cdc_1    conda-forge
ld_impl_linux-64          2.43                 h712a8e2_2    conda-forge
libblas                   3.9.0           26_linux64_openblas    conda-forge
libcblas                  3.9.0           26_linux64_openblas    conda-forge
libexpat                  2.6.4                h5888daf_0    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc                    14.2.0               h77fa898_1    conda-forge
libgcc-ng                 14.2.0               h69a702a_1    conda-forge
libgfortran               14.2.0               h69a702a_1    conda-forge
libgfortran5              14.2.0               hd5240d6_1    conda-forge
libgomp                   14.2.0               h77fa898_1    conda-forge
liblapack                 3.9.0           26_linux64_openblas    conda-forge
liblzma                   5.6.3                hb9d3cd8_1    conda-forge
libnsl                    2.0.1                hd590300_0    conda-forge
libopenblas               0.3.28          pthreads_h94d23a6_1    conda-forge
libsqlite                 3.47.2               hee588c1_0    conda-forge
libstdcxx                 14.2.0               hc0a3c3a_1    conda-forge
libstdcxx-ng              14.2.0               h4852527_1    conda-forge
libuuid                   2.38.1               h0b41bf4_0    conda-forge
libxcrypt                 4.4.36               hd590300_1    conda-forge
libzlib                   1.3.1                hb9d3cd8_2    conda-forge
mendeleev                 0.20.1             pyh26b27b7_1    conda-forge
ncurses                   6.5                  h2d0b736_2    conda-forge
numpy                     1.26.4          py312heda63a1_0    conda-forge
openssl                   3.4.0                h7b32b05_1    conda-forge
pandas                    2.2.3           py312hf9745cd_1    conda-forge
pip                       24.3.1             pyh8b19718_2    conda-forge
pydantic                  2.10.5             pyh3cfb1c2_0    conda-forge
pydantic-core             2.27.2          py312h12e396e_0    conda-forge
pyfiglet                  0.8.post1                  py_0    conda-forge
pygments                  2.19.1             pyhd8ed1ab_0    conda-forge
python                    3.12.8          h9e4cc4f_1_cpython    conda-forge
python-dateutil           2.9.0.post0        pyhff2d567_1    conda-forge
python-tzdata             2024.2             pyhd8ed1ab_1    conda-forge
python_abi                3.12                    5_cp312    conda-forge
pytz                      2024.1             pyhd8ed1ab_0    conda-forge
readline                  8.2                  h8228510_1    conda-forge
setuptools                75.8.0             pyhff2d567_0    conda-forge
six                       1.17.0             pyhd8ed1ab_0    conda-forge
sqlalchemy                2.0.37          py312h66e93f0_0    conda-forge
tk                        8.6.13          noxft_h4845f30_101    conda-forge
typing-extensions         4.12.2               hd8ed1ab_1    conda-forge
typing_extensions         4.12.2             pyha770c72_1    conda-forge
tzdata                    2024b                hc8b5060_0    conda-forge
wheel                     0.45.1             pyhd8ed1ab_1    conda-forge
wrapt                     1.17.0          py312h66e93f0_0    conda-forge

Environment info

mamba version : 1.5.6
     active environment : mendeleev-np1
    active env location : /home/jz748/anaconda3/envs/mendeleev-np1
            shell level : 2
       user config file : /home/jz748/.condarc
 populated config files : /home/jz748/anaconda3/.condarc
                          /home/jz748/.condarc
          conda version : 23.11.0
    conda-build version : 3.28.4
         python version : 3.10.13.final.0
                 solver : libmamba (default)
       virtual packages : __archspec=1=skylake
                          __conda=23.11.0=0
                          __cuda=12.4=0
                          __glibc=2.37=0
                          __linux=6.8.9=0
                          __unix=0=0
       base environment : /home/jz748/anaconda3  (writable)
      conda av data dir : /home/jz748/anaconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
          package cache : /home/jz748/anaconda3/pkgs
                          /home/jz748/.conda/pkgs
       envs directories : /home/jz748/anaconda3/envs
                          /home/jz748/.conda/envs
               platform : linux-64
             user-agent : conda/23.11.0 requests/2.32.3 CPython/3.10.13 Linux/6.8.9-100.fc38.x86_64 fedora/38 glibc/2.37 solver/libmamba conda-libmamba-solver/24.1.0 libmambapy/1.5.6
                UID:GID : 1001:1002
             netrc file : None
           offline mode : False

[njzjz]

In conda-forge/deepmd-kit-feedstock#90, this error still exists:

https://dev.azure.com/conda-forge/feedstock-builds/_build/results?buildId=1172566&view=logs&jobId=d49dbcef-bf20-5a8a-a3c0-6b6309067d07&j=5eaeabf9-98bb-5ad4-ae9b-9c34ad8b134f&t=f9feff57-a1a8-511d-d6e0-bac292e08e21

+ pip check
mendeleev 0.20.1 has requirement numpy<3.0,>=2.0; python_version >= "3.12", but you have numpy 1.26.4.

    mendeleev:                0.20.1-pyh26b27b7_1                       conda-forge

[h-vetinari]

The condition

mendeleev-feedstock/recipe/meta.yaml

Line 37 in 34fce0b

- numpy <3.0,>=2.0

is very likely incorrect. A build compiled against numpy 2.0 is compatible with numpy >=1.19,<3. This is handled by the run-export of numpy, so no need to do this manually. That is, unless mendeleev requires runtime features from numpy 2.0, in which case you can simply add numpy >=2.0 in the run-requirements.

In either case, don't manually recreate numpy's run-exports.

[h-vetinari]

Gentle ping @conda-forge/mendeleev