Skip to content
This repository was archived by the owner on Nov 11, 2024. It is now read-only.

That one good idea I had for a new take on FASTQ quality visualization #58

Open
clintval opened this issue Dec 8, 2019 · 0 comments · May be fixed by #68
Open

That one good idea I had for a new take on FASTQ quality visualization #58

clintval opened this issue Dec 8, 2019 · 0 comments · May be fixed by #68
Labels
feature request

Comments

@clintval
Copy link
Owner

clintval commented Dec 8, 2019 •
edited
Loading 

import pandas as pd

import matplotlib.pyplot as plt

df = pd.read_csv("/Users/cvalentine/scratch/fastq-qual/1.csv")
fig, ax = plt.subplots(figsize=(5, 10))
ax.imshow(df.values, aspect='auto')
Sign up for free to subscribe to this conversation on GitHub. Already have an account? Sign in.
Assignees
No one assigned
Labels
feature request
Projects
None yet
Milestone
No milestone
Development

Successfully merging a pull request may close this issue.

Tool to enable better visualization of basecall quality scores in sequencing data clintval/cvbio
1 participant
@clintval