conf.json

{
    "version": "0.3.4",
    "schema_generation": {
        "raw_url_prefix": "https://raw.githubusercontent.com/biomarker-ontology/biomarker-partnership/main/schema/",
        "output_path": "../schema/",
        "output_file": "biomarker_schema.json",
        "schema": "http://json-schema.org/draft-07/schema#"
    },
    "validation": {
        "log_path": "../home/logs/validation_log.log",
        "intermediate_path": "../home/intermediate_data/"
    },
    "data_conversion": {
        "log_path": "../../home/logs/conversion_log.log",
        "url_map_path": "../../mapping_data/url_map.json",
        "namespace_map_path": "../../mapping_data/namespace_map.json",
        "triples_map_path": "../../mapping_data/triples_map.json"
    },
    "testing": {
        "log_path": "../../home/logs/test_log.log",
        "source_files": {
            "skeleton_dictionary": "../../data_dictionary/skeleton_dictionary.py",
            "data_dictionary": "../../data_dictionary/process_dictionary.py",
            "schema": "../../schema/validate_data.py",
            "data_conversion": "../../src/data_conversion/data_conversion.py"
        },
        "tmp_output_path": "./",
        "python_env": "../env/bin/python"
    }
}