A0399 specimen and disease name

[kmartinez834]

https://data.tst.oncomx.org/allbiomarkers/biomarker/A0399

Urinary bladder cancer panel lists specimen type and disease name as Lung Cancer, please confirm if this is correct.

[danlymangw]

Yes, this is an error.
I saw this error in the file before sending it to you and thought I had fixed it; good catch.

Corrections:
Specimen type: urine (UN:0001088)
Disease name: urinary bladder cancer (DOID:11054)

[kmartinez834]

Please take a look at these panel files and let me know if we should revert back to the "original" from April 2022:

Current file: https://data.tst.oncomx.org/OMX_000095

April 2022 file:
human_cancer_biomarker_panel_vysis_urinary_bladder_cancer_042522.csv

[danlymangw]

Yes, all these values (Specimen type: lung (UN:0002048), Disease name: lung cancer (DOID:1324)) are incorrect. Correct values: Specimen type: urine (UN:0001088) Disease name: urinary bladder cancer (DOID:11054) Also, I've noticed some issues with BCOs that we should discuss Daniel Lyman, PhD Senior Research Associate Cancer Biomarkers Project Lead, HIVE-Lab MS in Bioinformatics and Biochemistry Program Coordinator Department of Biochemistry and Molecular Medicine School of Medicine & Health Sciences The George Washington University Ross Hall 2300 Eye Street N.W. Washington, DC 20037 Phone lab: 202-994-3639 MS Program Office hours: T/W 9:00am-5:00pm

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On Thu, Jan 26, 2023 at 10:37 AM Karina Martinez ***@***.***> wrote: Please take a look at these panel files and let me know if we should revert back to the "original" from April 2022: Current file: https://data.tst.oncomx.org/OMX_000095 April 2022 file: human_cancer_biomarker_panel_vysis_urinary_bladder_cancer_042522.csv <https://github.com/biomarker-ontology/biomarkerontology/files/10510782/human_cancer_biomarker_panel_vysis_urinary_bladder_cancer_042522.csv> — Reply to this email directly, view it on GitHub <#3 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/A4WWYUUBYBGT667HEG4BUP3WUKKZRANCNFSM6AAAAAAUFO6U64> . You are receiving this because you were assigned.Message ID: ***@***.***>