globalvar.sh

#!/bin/bash                                                                                                                                       
glob_ENV="r_env" # conda environment with requirements                                                                                                 
glob_workdir="/work/$USER/incubatoR_test" # define working directory                                                                              
glob_mode="Pos" # ion mode                                                                                                                        
glob_filedir="/home/$USER/testdata/mzml" # folder with mzml-files                                                                                 
glob_Rscripts="/home/$USER/incubatoR/Rscripts" # folder with Rscripts                                                                             
glob_input="/home/$USER/incubatoR/test/input_files" # folder containing input files