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it's running too long time #775

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JoannaWu-cloud opened this issue Feb 8, 2025 · 2 comments
Open

it's running too long time #775

JoannaWu-cloud opened this issue Feb 8, 2025 · 2 comments

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@JoannaWu-cloud
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Hello,

I am using hifiasm to assemble a big genome which is about 13Gb, with hifi sequence data about 800G. It's running for more than two months, but I still didn't get the final genome sequence. there are only 3 output files, asm.ec.bin, asm.ovlp.reverse.bin and asm.ovlp.source.bin. I also encountered 'ERROR6' warnings.
Is there any problem for big genome running? Should I wait for the script running ? How can I quickly obtain the result of the script execution?

I'm looking forward to your reply. Thank you!

@chhylp123
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How long did it take after generating the bin files? The most time-consuming step, error correction, is already complete.

@JoannaWu-cloud
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Thank you for your reply. The program started to run on 2024.11.27, and the bin files generated on 2024.12.9. The laste two months it keeps running, but did not output any files.

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