Illegal instruction (core dumped)

[themwg]

I'm struggling to get hifiasm to run with my data as well as the test dataset chr11-2M.fa.gz
It will run through the initial Kmer steps, then crashes, " Illegal Instruction (core dumped) "

I have 3.6T of space and 500GB or RAM. The machine is old, however. The OS is Ubuntu 16.04
Any thoughts/advice would be greatly appreciated

Test.log

[M::ha_analyze_count] lowest: count[5] = 1208
[M::ha_analyze_count] highest: count[36] = 103835
[M::ha_hist_line] 1: ****************************************************************************************************> 926093
[M::ha_hist_line] 2: ********* 9075
[M::ha_hist_line] 3: **** 4335
[M::ha_hist_line] 4: ** 2244
[M::ha_hist_line] 5: * 1208
[M::ha_hist_line] 6: ** 1728
[M::ha_hist_line] 7: ** 1705
[M::ha_hist_line] 8: * 904
[M::ha_hist_line] 9: ** 1697
[M::ha_hist_line] 10: ** 1604
[M::ha_hist_line] 11: *** 3523
[M::ha_hist_line] 12: ***** 5603
[M::ha_hist_line] 13: ******** 7968
[M::ha_hist_line] 14: ************ 12909
[M::ha_hist_line] 15: **************** 17029
[M::ha_hist_line] 16: ****************** 18527
[M::ha_hist_line] 17: ****************** 19018
[M::ha_hist_line] 18: ******************* 19501
[M::ha_hist_line] 19: ***************** 17942
[M::ha_hist_line] 20: ***************** 17860
[M::ha_hist_line] 21: ***************** 17443
[M::ha_hist_line] 22: ************** 14231
[M::ha_hist_line] 23: ************ 12725
[M::ha_hist_line] 24: ********* 9819
[M::ha_hist_line] 25: *********** 11823
[M::ha_hist_line] 26: **************** 16562
[M::ha_hist_line] 27: ******************* 19929
[M::ha_hist_line] 28: *********************** 24300
[M::ha_hist_line] 29: ************************************ 37640
[M::ha_hist_line] 30: ***************************************************** 54676
[M::ha_hist_line] 31: **************************************************************** 65957
[M::ha_hist_line] 32: ********************************************************************* 71591
[M::ha_hist_line] 33: ***************************************************************************** 80351
[M::ha_hist_line] 34: ************************************************************************************** 89068
[M::ha_hist_line] 35: *********************************************************************************************** 98982
[M::ha_hist_line] 36: **************************************************************************************************** 103835
[M::ha_hist_line] 37: ********************************************************************************************* 96761
[M::ha_hist_line] 38: ************************************************************************************** 88959
[M::ha_hist_line] 39: ******************************************************************************** 83048
[M::ha_hist_line] 40: *************************************************************************** 77443
[M::ha_hist_line] 41: ********************************************************************* 71597
[M::ha_hist_line] 42: ******************************************************************** 70396
[M::ha_hist_line] 43: ******************************************************** 58644
[M::ha_hist_line] 44: ********************************************** 47523
[M::ha_hist_line] 45: ************************************** 39539
[M::ha_hist_line] 46: ********************************* 33771
[M::ha_hist_line] 47: *********************** 23618
[M::ha_hist_line] 48: ******************** 20504
[M::ha_hist_line] 49: **************** 16421
[M::ha_hist_line] 50: *********** 11262
[M::ha_hist_line] 51: ******** 7791
[M::ha_hist_line] 52: ******* 7490
[M::ha_hist_line] 53: ******* 7085
[M::ha_hist_line] 54: ***** 4983
[M::ha_hist_line] 55: ** 2159
[M::ha_hist_line] 56: * 622
[M::ha_hist_line] rest: *** 2932
test.log (END)

[chhylp123]

This often happens due to some other problems instead of hifiasm itself, such as running a binary built for a newer processor is run on an older processor without support for a new instruction set.

[themwg]

unfortunate. I assume this means there's no easy solution, and I won't be able to run hifiasm on this computer?

[chhylp123]

How do you install hifiasm? Compile it from code should be not so hard. You may also consider to use Conda.

[themwg]

I ran $git clone https://github.com/chhylp123/hifiasm.git
then from hifiasm/ ran $sudo make

[chhylp123]

Probably give conda a try: https://anaconda.org/bioconda/hifiasm.

[themwg]

Unfortunately the conda install didn't work either. It runs into " Illegal Instruction (core dumped) " even faster, not going through the initial phase like above.

Any thoughts on a solution would be very appreciated.