nodejs.yml

name: CI

on: push

jobs:
  build:
    runs-on: ubuntu-latest

    steps:
      - uses: actions/checkout@v2
      - name: Setup env
        run: |
          echo 'BLAST_VERSION<<EOF' >> $GITHUB_ENV
          cat ./BLAST_VERSION >> $GITHUB_ENV
          echo 'EOF' >> $GITHUB_ENV
      - name: Cache blast
        id: cache-blast
        uses: actions/cache@v2
        with:
          path: ~/blast
          key: ${{ env.BLAST_VERSION }}

      - name: Download Blast+
        if: steps.cache-blast.outputs.cache-hit != 'true'
        run: |
          mkdir ~/blast
          wget -qO- "ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${{ env.BLAST_VERSION }}/ncbi-blast-${{ env.BLAST_VERSION }}+-x64-linux.tar.gz" | tar xvz -C ~/blast

      - name: Install dependencies
        run: npm ci
      - name: Run tests
        run: |
          export BLAST_DIRECTORY_PATH="${HOME}/blast/ncbi-blast-${BLAST_VERSION}+/bin"
          npm run test