diff --git a/reprocess_public_10x.sh b/reprocess_public_10x.sh index 1183881..b099c07 100755 --- a/reprocess_public_10x.sh +++ b/reprocess_public_10x.sh @@ -40,6 +40,7 @@ if [[ $SUBSET != "" ]] then >&2 echo "WARNING: Using file $SUBSET to only process select samples!" SUBSET=`readlink -f $SUBSET` + cp $SUBSET $SERIES.subset.list if [[ `grep "^GSM" $SUBSET` == "" && `grep "^SRS" $SUBSET` == "" && `grep "^ERS" $SUBSET` == "" ]] then >&2 echo "ERROR: The subset file $SUBSET can only contain GSM, SRS, or ERS IDs!"