Skip to content

Document mapping from MapMyCells JSON to CAS  #86

@dosumis

Description

@dosumis
  1. Summarise key information from doc https://portal.brain-map.org/explore/cell-type-references-and-algorithms
  2. Find a small dataset on CellXGene with cortical cell types
  3. Test this with MapMyCells + 3 different algos
  4. Document the JSON
  5. Make mappings to CAS

AIm for CAS. We need to be able to

  1. Identify the taxonomy mapped to
  2. Generate labelset metadata for annotation transfer labelsets
    image
    https://github.com/cellannotation/cell-annotation-schema/blob/main/build/general_schema.md
  • What can we get from the JSON? What do we need as args to some conversion method?
  • What conventions do we need for naming labelsets
  1. Generate labelsets

Hierarchical mapping algorithms generate multiple mappings corresponding to multiple levels in the hierarchy. These should become multiple labelsets.

Metadata

Metadata

Assignees

Labels

No labels
No labels

Type

No type
No fields configured for issues without a type.

Projects

No projects

Milestone

No milestone

Relationships

None yet

Development

No branches or pull requests

Issue actions