diff --git a/poetry.lock b/poetry.lock index 8431635..9fd1cb0 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.1.2 and should not be changed by hand. [[package]] name = "aiobotocore" @@ -6,6 +6,8 @@ version = "2.21.1" description = "Async client for aws services using botocore and aiohttp" optional = false python-versions = ">=3.8" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "aiobotocore-2.21.1-py3-none-any.whl", hash = "sha256:bd7c49a6d6f8a3d9444b0a94417c8da13813b5c7eec1c4f0ec2db7e8ce8f23e7"}, {file = "aiobotocore-2.21.1.tar.gz", hash = "sha256:010357f43004413e92a9d066bb0db1f241aeb29ffed306e9197061ffc94e6577"}, @@ -30,6 +32,8 @@ version = "2.6.1" description = "Happy Eyeballs for asyncio" optional = false python-versions = ">=3.9" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "aiohappyeyeballs-2.6.1-py3-none-any.whl", hash = "sha256:f349ba8f4b75cb25c99c5c2d84e997e485204d2902a9597802b0371f09331fb8"}, {file = "aiohappyeyeballs-2.6.1.tar.gz", hash = "sha256:c3f9d0113123803ccadfdf3f0faa505bc78e6a72d1cc4806cbd719826e943558"}, @@ -41,6 +45,8 @@ version = "3.11.18" description = "Async http client/server framework (asyncio)" optional = false python-versions = ">=3.9" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "aiohttp-3.11.18-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:96264854fedbea933a9ca4b7e0c745728f01380691687b7365d18d9e977179c4"}, {file = "aiohttp-3.11.18-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:9602044ff047043430452bc3a2089743fa85da829e6fc9ee0025351d66c332b6"}, @@ -136,7 +142,7 @@ propcache = ">=0.2.0" yarl = ">=1.17.0,<2.0" [package.extras] -speedups = ["Brotli", "aiodns (>=3.2.0)", "brotlicffi"] +speedups = ["Brotli ; platform_python_implementation == \"CPython\"", "aiodns (>=3.2.0) ; sys_platform == \"linux\" or sys_platform == \"darwin\"", "brotlicffi ; platform_python_implementation != \"CPython\""] [[package]] name = "aioitertools" @@ -144,6 +150,8 @@ version = "0.12.0" description = "itertools and builtins for AsyncIO and mixed iterables" optional = false python-versions = ">=3.8" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "aioitertools-0.12.0-py3-none-any.whl", hash = "sha256:fc1f5fac3d737354de8831cbba3eb04f79dd649d8f3afb4c5b114925e662a796"}, {file = "aioitertools-0.12.0.tar.gz", hash = "sha256:c2a9055b4fbb7705f561b9d86053e8af5d10cc845d22c32008c43490b2d8dd6b"}, @@ -159,6 +167,8 @@ version = "1.3.2" description = "aiosignal: a list of registered asynchronous callbacks" optional = false python-versions = ">=3.9" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "aiosignal-1.3.2-py2.py3-none-any.whl", hash = "sha256:45cde58e409a301715980c2b01d0c28bdde3770d8290b5eb2173759d9acb31a5"}, {file = "aiosignal-1.3.2.tar.gz", hash = "sha256:a8c255c66fafb1e499c9351d0bf32ff2d8a0321595ebac3b93713656d2436f54"}, @@ -173,6 +183,7 @@ version = "0.2.6" description = "Easy and quick html builder with natural syntax correspondence (python->html). No templates needed. Serves pure pythonic library with no dependencies." optional = false python-versions = "*" +groups = ["main"] files = [ {file = "airium-0.2.6-py3-none-any.whl", hash = "sha256:50af5cf491e084f27909e29a93550b4170e587cde01334d58c6249644ee8c6c2"}, {file = "airium-0.2.6.tar.gz", hash = "sha256:ccab36b798b6cce3d0c5074e52ce8059f6e82991caae4985f42cadfad80b1de4"}, @@ -188,6 +199,7 @@ version = "0.7.16" description = "A light, configurable Sphinx theme" optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "alabaster-0.7.16-py3-none-any.whl", hash = "sha256:b46733c07dce03ae4e150330b975c75737fa60f0a7c591b6c8bf4928a28e2c92"}, {file = "alabaster-0.7.16.tar.gz", hash = "sha256:75a8b99c28a5dad50dd7f8ccdd447a121ddb3892da9e53d1ca5cca3106d58d65"}, @@ -199,6 +211,7 @@ version = "0.10.5" description = "Annotated data." optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "anndata-0.10.5-py3-none-any.whl", hash = "sha256:fbcf934a3e99e7dda89b1d48f36f675504ea2e65ab4408daa9526bc305c14ebd"}, {file = "anndata-0.10.5.tar.gz", hash = "sha256:a55fcd75c2b445ad82938ecd41de1dd4caf66547290d2423327e0e89f71bf590"}, @@ -226,6 +239,7 @@ version = "0.7.0" description = "Reusable constraint types to use with typing.Annotated" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"}, {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"}, @@ -237,6 +251,7 @@ version = "4.9.3" description = "ANTLR 4.9.3 runtime for Python 3.7" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "antlr4-python3-runtime-4.9.3.tar.gz", hash = "sha256:f224469b4168294902bb1efa80a8bf7855f24c99aef99cbefc1bcd3cce77881b"}, ] @@ -247,6 +262,7 @@ version = "1.4.4" description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." optional = false python-versions = "*" +groups = ["main"] files = [ {file = "appdirs-1.4.4-py2.py3-none-any.whl", hash = "sha256:a841dacd6b99318a741b166adb07e19ee71a274450e68237b4650ca1055ab128"}, {file = "appdirs-1.4.4.tar.gz", hash = "sha256:7d5d0167b2b1ba821647616af46a749d1c653740dd0d2415100fe26e27afdf41"}, @@ -258,6 +274,7 @@ version = "1.11.2" description = "A wrapper around NumPy and other array libraries to make them compatible with the Array API standard" optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "array_api_compat-1.11.2-py3-none-any.whl", hash = "sha256:b1d0059714a4153b3ae37c989e47b07418f727be5b22908dd3cf9d19bdc2c547"}, {file = "array_api_compat-1.11.2.tar.gz", hash = "sha256:a3b7f7b6af18f4c42e79423b1b2479798998b6a74355069d77a01a5282755b5d"}, @@ -277,6 +294,7 @@ version = "1.3.0" description = "Better dates & times for Python" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "arrow-1.3.0-py3-none-any.whl", hash = "sha256:c728b120ebc00eb84e01882a6f5e7927a53960aa990ce7dd2b10f39005a67f80"}, {file = "arrow-1.3.0.tar.gz", hash = "sha256:d4540617648cb5f895730f1ad8c82a65f2dad0166f57b75f3ca54759c4d67a85"}, @@ -296,6 +314,8 @@ version = "5.0.1" description = "Timeout context manager for asyncio programs" optional = false python-versions = ">=3.8" +groups = ["main"] +markers = "python_version == \"3.10\"" files = [ {file = "async_timeout-5.0.1-py3-none-any.whl", hash = "sha256:39e3809566ff85354557ec2398b55e096c8364bacac9405a7a1fa429e77fe76c"}, {file = "async_timeout-5.0.1.tar.gz", hash = "sha256:d9321a7a3d5a6a5e187e824d2fa0793ce379a202935782d555d6e9d2735677d3"}, @@ -307,18 +327,19 @@ version = "25.3.0" description = "Classes Without Boilerplate" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "attrs-25.3.0-py3-none-any.whl", hash = "sha256:427318ce031701fea540783410126f03899a97ffc6f61596ad581ac2e40e3bc3"}, {file = "attrs-25.3.0.tar.gz", hash = "sha256:75d7cefc7fb576747b2c81b4442d4d4a1ce0900973527c011d1030fd3bf4af1b"}, ] [package.extras] -benchmark = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-codspeed", "pytest-mypy-plugins", "pytest-xdist[psutil]"] -cov = ["cloudpickle", "coverage[toml] (>=5.3)", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"] -dev = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pre-commit-uv", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"] +benchmark = ["cloudpickle ; platform_python_implementation == \"CPython\"", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pympler", "pytest (>=4.3.0)", "pytest-codspeed", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"] +cov = ["cloudpickle ; platform_python_implementation == \"CPython\"", "coverage[toml] (>=5.3)", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"] +dev = ["cloudpickle ; platform_python_implementation == \"CPython\"", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pre-commit-uv", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"] docs = ["cogapp", "furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier"] -tests = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"] -tests-mypy = ["mypy (>=1.11.1)", "pytest-mypy-plugins"] +tests = ["cloudpickle ; platform_python_implementation == \"CPython\"", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"] +tests-mypy = ["mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\""] [[package]] name = "babel" @@ -326,13 +347,14 @@ version = "2.17.0" description = "Internationalization utilities" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "babel-2.17.0-py3-none-any.whl", hash = "sha256:4d0b53093fdfb4b21c92b5213dba5a1b23885afa8383709427046b21c366e5f2"}, {file = "babel-2.17.0.tar.gz", hash = "sha256:0c54cffb19f690cdcc52a3b50bcbf71e07a808d1c80d549f2459b9d2cf0afb9d"}, ] [package.extras] -dev = ["backports.zoneinfo", "freezegun (>=1.0,<2.0)", "jinja2 (>=3.0)", "pytest (>=6.0)", "pytest-cov", "pytz", "setuptools", "tzdata"] +dev = ["backports.zoneinfo ; python_version < \"3.9\"", "freezegun (>=1.0,<2.0)", "jinja2 (>=3.0)", "pytest (>=6.0)", "pytest-cov", "pytz", "setuptools", "tzdata ; sys_platform == \"win32\""] [[package]] name = "bcp47" @@ -340,6 +362,7 @@ version = "0.1.0" description = "Language tags made easy" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "bcp47-0.1.0-py3-none-any.whl", hash = "sha256:a567b7fe881c900916a9db62ac8f792370c7ddf2664e601b74eeed35d8758aa5"}, {file = "bcp47-0.1.0.tar.gz", hash = "sha256:37cc7a03fd696149ebfe7de785c5bad473f911eddac8415cf479584049cf03d5"}, @@ -351,6 +374,7 @@ version = "4.13.4" description = "Screen-scraping library" optional = false python-versions = ">=3.7.0" +groups = ["main"] files = [ {file = "beautifulsoup4-4.13.4-py3-none-any.whl", hash = "sha256:9bbbb14bfde9d79f38b8cd5f8c7c85f4b8f2523190ebed90e950a8dea4cb1c4b"}, {file = "beautifulsoup4-4.13.4.tar.gz", hash = "sha256:dbb3c4e1ceae6aefebdaf2423247260cd062430a410e38c66f2baa50a8437195"}, @@ -373,6 +397,7 @@ version = "0.12.11" description = "Integrated registry of biological databases and nomenclatures" optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "bioregistry-0.12.11-py3-none-any.whl", hash = "sha256:7877ee485feeb6cd2126fa425e2e072e8be512415f0c99cd8e596d20cb3ce823"}, {file = "bioregistry-0.12.11.tar.gz", hash = "sha256:24e31c0673ddd8024e9194055f9f76649769797ff1ea83efe2d59ca7ff569593"}, @@ -405,6 +430,7 @@ version = "23.12.1" description = "The uncompromising code formatter." optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "black-23.12.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:e0aaf6041986767a5e0ce663c7a2f0e9eaf21e6ff87a5f95cbf3675bfd4c41d2"}, {file = "black-23.12.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:c88b3711d12905b74206227109272673edce0cb29f27e1385f33b0163c414bba"}, @@ -441,7 +467,7 @@ typing-extensions = {version = ">=4.0.1", markers = "python_version < \"3.11\""} [package.extras] colorama = ["colorama (>=0.4.3)"] -d = ["aiohttp (>=3.7.4)", "aiohttp (>=3.7.4,!=3.9.0)"] +d = ["aiohttp (>=3.7.4) ; sys_platform != \"win32\" or implementation_name != \"pypy\"", "aiohttp (>=3.7.4,!=3.9.0) ; sys_platform == \"win32\" and implementation_name == \"pypy\""] jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"] uvloop = ["uvloop (>=0.15.2)"] @@ -451,6 +477,8 @@ version = "1.37.1" description = "Low-level, data-driven core of boto 3." optional = false python-versions = ">=3.8" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "botocore-1.37.1-py3-none-any.whl", hash = "sha256:c1db1bfc5d8c6b3b6d1ca6794f605294b4264e82a7e727b88e0fef9c2b9fbb9c"}, {file = "botocore-1.37.1.tar.gz", hash = "sha256:b194db8fb2a0ffba53568c364ae26166e7eec0445496b2ac86a6e142f3dd982f"}, @@ -470,6 +498,7 @@ version = "5.5.2" description = "Extensible memoizing collections and decorators" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "cachetools-5.5.2-py3-none-any.whl", hash = "sha256:d26a22bcc62eb95c3beabd9f1ee5e820d3d2704fe2967cbe350e20c8ffcd3f0a"}, {file = "cachetools-5.5.2.tar.gz", hash = "sha256:1a661caa9175d26759571b2e19580f9d6393969e5dfca11fdb1f947a23e640d4"}, @@ -481,6 +510,7 @@ version = "0.3.1" description = "Partial read/write of AnnData (h5ad) files for low-memory operations with large datasets." optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "cap_anndata-0.3.1-py3-none-any.whl", hash = "sha256:b1f83bba36eff7a853aa3a94d2876c9157c6c1eb4b23b7884686cb89f80baa62"}, {file = "cap_anndata-0.3.1.tar.gz", hash = "sha256:92f14e5d1eb80ca8a7ab30f91cad2c8309f0d67d306e48d8221c298027ea7056"}, @@ -500,6 +530,7 @@ version = "0.0.15" description = "General, open-standard schema for cell annotations" optional = false python-versions = "<4.0,>=3.9" +groups = ["main"] files = [ {file = "cas_linkml-0.0.15-py3-none-any.whl", hash = "sha256:3eaa602f3f2c08ffc28a5d0a60d0f06967f680fbdebb03e57c09c8a630e0042b"}, {file = "cas_linkml-0.0.15.tar.gz", hash = "sha256:465c36e7de928ef3794f021d09843fec9bae3f6d99be14276542b63a310165e4"}, @@ -518,6 +549,7 @@ version = "24.1.3" description = "Composable complex class support for attrs and dataclasses." optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "cattrs-24.1.3-py3-none-any.whl", hash = "sha256:adf957dddd26840f27ffbd060a6c4dd3b2192c5b7c2c0525ef1bd8131d8a83f5"}, {file = "cattrs-24.1.3.tar.gz", hash = "sha256:981a6ef05875b5bb0c7fb68885546186d306f10f0f6718fe9b96c226e68821ff"}, @@ -532,8 +564,8 @@ typing-extensions = {version = ">=4.1.0,<4.6.3 || >4.6.3", markers = "python_ver bson = ["pymongo (>=4.4.0)"] cbor2 = ["cbor2 (>=5.4.6)"] msgpack = ["msgpack (>=1.0.5)"] -msgspec = ["msgspec (>=0.18.5)"] -orjson = ["orjson (>=3.9.2)"] +msgspec = ["msgspec (>=0.18.5) ; implementation_name == \"cpython\""] +orjson = ["orjson (>=3.9.2) ; implementation_name == \"cpython\""] pyyaml = ["pyyaml (>=6.0)"] tomlkit = ["tomlkit (>=0.11.8)"] ujson = ["ujson (>=5.7.0)"] @@ -544,6 +576,7 @@ version = "1.1.0" description = "Cell Annotation Schema" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "cell-annotation-schema-1.1.0.tar.gz", hash = "sha256:cde4c4893fb5b336a21fc1f7a7facb23ca7395556f03bffaf9a153671b3d3c14"}, {file = "cell_annotation_schema-1.1.0-py3-none-any.whl", hash = "sha256:e386fbaad4fcad4395ca284318053a0c5db8e41eaaf98c1938d306da6f18b647"}, @@ -561,6 +594,8 @@ version = "1.16.0" description = "API to facilitate the use of the CZ CELLxGENE Discover Census. For more information about the API and the project visit https://github.com/chanzuckerberg/cellxgene-census/" optional = false python-versions = "<3.13,>=3.10" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "cellxgene_census-1.16.0-py3-none-any.whl", hash = "sha256:8dbf866235abd3fff52f44f7c4fef2239ed943411e7109274aa051fb19f913eb"}, {file = "cellxgene_census-1.16.0.tar.gz", hash = "sha256:ea350a1fa976fc9867491347e19823a799bc57421ea9246d10e75138d31a8281"}, @@ -584,6 +619,7 @@ version = "2025.1.31" description = "Python package for providing Mozilla's CA Bundle." optional = false python-versions = ">=3.6" +groups = ["main", "dev"] files = [ {file = "certifi-2025.1.31-py3-none-any.whl", hash = "sha256:ca78db4565a652026a4db2bcdf68f2fb589ea80d0be70e03929ed730746b84fe"}, {file = "certifi-2025.1.31.tar.gz", hash = "sha256:3d5da6925056f6f18f119200434a4780a94263f10d1c21d032a6f6b2baa20651"}, @@ -595,6 +631,7 @@ version = "0.2.1" description = "rdflib collections flattening graph" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "CFGraph-0.2.1.tar.gz", hash = "sha256:b57fe7044a10b8ff65aa3a8a8ddc7d4cd77bf511b42e57289cd52cbc29f8fe74"}, ] @@ -608,6 +645,7 @@ version = "5.2.0" description = "Universal encoding detector for Python 3" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "chardet-5.2.0-py3-none-any.whl", hash = "sha256:e1cf59446890a00105fe7b7912492ea04b6e6f06d4b742b2c788469e34c82970"}, {file = "chardet-5.2.0.tar.gz", hash = "sha256:1b3b6ff479a8c414bc3fa2c0852995695c4a026dcd6d0633b2dd092ca39c1cf7"}, @@ -619,6 +657,7 @@ version = "3.4.1" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." optional = false python-versions = ">=3.7" +groups = ["main", "dev"] files = [ {file = "charset_normalizer-3.4.1-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:91b36a978b5ae0ee86c394f5a54d6ef44db1de0815eb43de826d41d21e4af3de"}, {file = "charset_normalizer-3.4.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:7461baadb4dc00fd9e0acbe254e3d7d2112e7f92ced2adc96e54ef6501c5f176"}, @@ -720,6 +759,7 @@ version = "0.6.0" description = "Lookup and instantiate classes with style." optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "class_resolver-0.6.0-py3-none-any.whl", hash = "sha256:cc629187a10bacff2e360939f8a4e8e7d209583dc8b318485ff91a0d24d5c9d0"}, {file = "class_resolver-0.6.0.tar.gz", hash = "sha256:8a3c20ab771925477f65cad8a49bb431e11543c82fbfadbf611c6769228a6cae"}, @@ -743,6 +783,7 @@ version = "8.1.8" description = "Composable command line interface toolkit" optional = false python-versions = ">=3.7" +groups = ["main", "dev"] files = [ {file = "click-8.1.8-py3-none-any.whl", hash = "sha256:63c132bbbed01578a06712a2d1f497bb62d9c1c0d329b7903a866228027263b2"}, {file = "click-8.1.8.tar.gz", hash = "sha256:ed53c9d8990d83c2a27deae68e4ee337473f6330c040a31d4225c9574d16096a"}, @@ -757,6 +798,7 @@ version = "1.2.4" description = "click_default_group" optional = false python-versions = ">=2.7" +groups = ["main"] files = [ {file = "click_default_group-1.2.4-py2.py3-none-any.whl", hash = "sha256:9b60486923720e7fc61731bdb32b617039aba820e22e1c88766b1125592eaa5f"}, {file = "click_default_group-1.2.4.tar.gz", hash = "sha256:eb3f3c99ec0d456ca6cd2a7f08f7d4e91771bef51b01bdd9580cc6450fe1251e"}, @@ -774,6 +816,7 @@ version = "0.4.0" description = "Logging integration for Click" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "click-log-0.4.0.tar.gz", hash = "sha256:3970f8570ac54491237bcdb3d8ab5e3eef6c057df29f8c3d1151a51a9c23b975"}, {file = "click_log-0.4.0-py2.py3-none-any.whl", hash = "sha256:a43e394b528d52112af599f2fc9e4b7cf3c15f94e53581f74fa6867e68c91756"}, @@ -788,6 +831,8 @@ version = "0.4.6" description = "Cross-platform colored terminal text." optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" +groups = ["main", "dev"] +markers = "platform_system == \"Windows\" or sys_platform == \"win32\"" files = [ {file = "colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"}, {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"}, @@ -799,6 +844,8 @@ version = "1.3.2" description = "Python library for calculating contours of 2D quadrilateral grids" optional = false python-versions = ">=3.10" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "contourpy-1.3.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:ba38e3f9f330af820c4b27ceb4b9c7feee5fe0493ea53a8720f4792667465934"}, {file = "contourpy-1.3.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:dc41ba0714aa2968d1f8674ec97504a8f7e334f48eeacebcaa6256213acb0989"}, @@ -875,6 +922,7 @@ version = "0.10.13" description = "Idiomatic conversion between URIs and compact URIs (CURIEs)" optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "curies-0.10.13-py3-none-any.whl", hash = "sha256:5fec2af05b61f45dbe0638e196c3ce4cf8dc95af298c20325db779dac488df40"}, {file = "curies-0.10.13.tar.gz", hash = "sha256:bbd47f1dbc3f25c94538f0ecf1fe18498e27a1689b4e759615c2ccac5ee6275b"}, @@ -899,6 +947,8 @@ version = "0.12.1" description = "Composable style cycles" optional = false python-versions = ">=3.8" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "cycler-0.12.1-py3-none-any.whl", hash = "sha256:85cef7cff222d8644161529808465972e51340599459b8ac3ccbac5a854e0d30"}, {file = "cycler-0.12.1.tar.gz", hash = "sha256:88bb128f02ba341da8ef447245a9e138fae777f6a23943da4540077d3601eb1c"}, @@ -914,6 +964,7 @@ version = "1.9.2" description = "Simple creation of data classes from dictionaries." optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "dacite-1.9.2-py3-none-any.whl", hash = "sha256:053f7c3f5128ca2e9aceb66892b1a3c8936d02c686e707bee96e19deef4bc4a0"}, {file = "dacite-1.9.2.tar.gz", hash = "sha256:6ccc3b299727c7aa17582f0021f6ae14d5de47c7227932c47fec4cdfefd26f09"}, @@ -928,6 +979,7 @@ version = "1.3.46" description = "Diff and patch tables" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "daff-1.3.46.tar.gz", hash = "sha256:22d0da9fd6a3275b54c926a9c97b180f9258aad65113ea18f3fec52cbadcd818"}, ] @@ -938,6 +990,7 @@ version = "0.6.4" description = "Easily serialize dataclasses to and from JSON." optional = false python-versions = ">=3.7,<4.0" +groups = ["main"] files = [ {file = "dataclasses_json-0.6.4-py3-none-any.whl", hash = "sha256:f90578b8a3177f7552f4e1a6e535e84293cd5da421fcce0642d49c0d7bdf8df2"}, {file = "dataclasses_json-0.6.4.tar.gz", hash = "sha256:73696ebf24936560cca79a2430cbc4f3dd23ac7bf46ed17f38e5e5e7657a6377"}, @@ -953,6 +1006,7 @@ version = "1.1.0" description = "a toolset to deeply merge python dictionaries." optional = false python-versions = "*" +groups = ["main"] files = [ {file = "deepmerge-1.1.0-py3-none-any.whl", hash = "sha256:59e6ef80b77dc52af3882a1ea78da22bcfc91ae9cdabc0c80729049fe295ff8b"}, {file = "deepmerge-1.1.0.tar.gz", hash = "sha256:4c27a0db5de285e1a7ceac7dbc1531deaa556b627dea4900c8244581ecdfea2d"}, @@ -964,6 +1018,7 @@ version = "0.7.1" description = "XML bomb protection for Python stdlib modules" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +groups = ["main"] files = [ {file = "defusedxml-0.7.1-py2.py3-none-any.whl", hash = "sha256:a352e7e428770286cc899e2542b6cdaedb2b4953ff269a210103ec58f6198a61"}, {file = "defusedxml-0.7.1.tar.gz", hash = "sha256:1bb3032db185915b62d7c6209c5a8792be6a32ab2fedacc84e01b52c51aa3e69"}, @@ -975,6 +1030,7 @@ version = "1.2.18" description = "Python @deprecated decorator to deprecate old python classes, functions or methods." optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7" +groups = ["main"] files = [ {file = "Deprecated-1.2.18-py2.py3-none-any.whl", hash = "sha256:bd5011788200372a32418f888e326a09ff80d0214bd961147cfed01b5c018eec"}, {file = "deprecated-1.2.18.tar.gz", hash = "sha256:422b6f6d859da6f2ef57857761bfb392480502a64c3028ca9bbe86085d72115d"}, @@ -984,7 +1040,7 @@ files = [ wrapt = ">=1.10,<2" [package.extras] -dev = ["PyTest", "PyTest-Cov", "bump2version (<1)", "setuptools", "tox"] +dev = ["PyTest", "PyTest-Cov", "bump2version (<1)", "setuptools ; python_version >= \"3.12\"", "tox"] [[package]] name = "deprecation" @@ -992,6 +1048,7 @@ version = "2.1.0" description = "A library to handle automated deprecations" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "deprecation-2.1.0-py2.py3-none-any.whl", hash = "sha256:a10811591210e1fb0e768a8c25517cabeabcba6f0bf96564f8ff45189f90b14a"}, {file = "deprecation-2.1.0.tar.gz", hash = "sha256:72b3bde64e5d778694b0cf68178aed03d15e15477116add3fb773e581f9518ff"}, @@ -1006,6 +1063,7 @@ version = "2.7.0" description = "DNS toolkit" optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "dnspython-2.7.0-py3-none-any.whl", hash = "sha256:b4c34b7d10b51bcc3a5071e7b8dee77939f1e878477eeecc965e9835f63c6c86"}, {file = "dnspython-2.7.0.tar.gz", hash = "sha256:ce9c432eda0dc91cf618a5cedf1a4e142651196bbcd2c80e89ed5a907e5cfaf1"}, @@ -1026,6 +1084,7 @@ version = "0.6.2" description = "Pythonic argument parser, that will make you smile" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "docopt-0.6.2.tar.gz", hash = "sha256:49b3a825280bd66b3aa83585ef59c4a8c82f2c8a522dbe754a8bc8d08c85c491"}, ] @@ -1036,6 +1095,7 @@ version = "0.18.1" description = "Docutils -- Python Documentation Utilities" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +groups = ["dev"] files = [ {file = "docutils-0.18.1-py2.py3-none-any.whl", hash = "sha256:23010f129180089fbcd3bc08cfefccb3b890b0050e1ca00c867036e9d161b98c"}, {file = "docutils-0.18.1.tar.gz", hash = "sha256:679987caf361a7539d76e584cbeddc311e3aee937877c87346f31debc63e9d06"}, @@ -1047,6 +1107,7 @@ version = "0.10.3" description = "DuckDB in-process database" optional = false python-versions = ">=3.7.0" +groups = ["main"] files = [ {file = "duckdb-0.10.3-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:cd25cc8d001c09a19340739ba59d33e12a81ab285b7a6bed37169655e1cefb31"}, {file = "duckdb-0.10.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:2f9259c637b917ca0f4c63887e8d9b35ec248f5d987c886dfc4229d66a791009"}, @@ -1103,6 +1164,7 @@ version = "2.2.0" description = "A robust email address syntax and deliverability validation library." optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "email_validator-2.2.0-py3-none-any.whl", hash = "sha256:561977c2d73ce3611850a06fa56b414621e0c8faa9d66f2611407d87465da631"}, {file = "email_validator-2.2.0.tar.gz", hash = "sha256:cb690f344c617a714f22e66ae771445a1ceb46821152df8e165c5f9a364582b7"}, @@ -1118,6 +1180,7 @@ version = "2.0.0" description = "An implementation of lxml.xmlfile for the standard library" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "et_xmlfile-2.0.0-py3-none-any.whl", hash = "sha256:7a91720bc756843502c3b7504c77b8fe44217c85c537d85037f0f536151b2caa"}, {file = "et_xmlfile-2.0.0.tar.gz", hash = "sha256:dab3f4764309081ce75662649be815c4c9081e88f0837825f90fd28317d4da54"}, @@ -1129,6 +1192,7 @@ version = "0.6.0" description = "\"Python interface to NCBI's eutilities API\"" optional = false python-versions = ">=3.6" +groups = ["main"] files = [ {file = "eutils-0.6.0-py2.py3-none-any.whl", hash = "sha256:4938c4baff6ca52141204ff3eff3a91ec1e83e52a6c5d92e7163585117b96566"}, {file = "eutils-0.6.0.tar.gz", hash = "sha256:3515178c0aadb836206a3eee2bc9f340f3213c13b53632e058eb58a9219d03cf"}, @@ -1148,6 +1212,8 @@ version = "1.2.2" description = "Backport of PEP 654 (exception groups)" optional = false python-versions = ">=3.7" +groups = ["main"] +markers = "python_version == \"3.10\"" files = [ {file = "exceptiongroup-1.2.2-py3-none-any.whl", hash = "sha256:3111b9d131c238bec2f8f516e123e14ba243563fb135d3fe885990585aa7795b"}, {file = "exceptiongroup-1.2.2.tar.gz", hash = "sha256:47c2edf7c6738fafb49fd34290706d1a1a2f4d1c6df275526b62cbb4aa5393cc"}, @@ -1162,6 +1228,7 @@ version = "0.13.0" description = "Faultless AST for Open Biomedical Ontologies in Python." optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "fastobo-0.13.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:4620527cb6575a844dd244c725984f2d3d9b41d32140026782d18e1666f8228d"}, {file = "fastobo-0.13.0-cp310-cp310-macosx_12_0_x86_64.whl", hash = "sha256:4e126c58378c9df1c3f3c2f21f62b4badcd97076656e6f708ee5d0ec776c960c"}, @@ -1206,6 +1273,7 @@ version = "6.1.0" description = "the modular source code checker: pep8 pyflakes and co" optional = false python-versions = ">=3.8.1" +groups = ["dev"] files = [ {file = "flake8-6.1.0-py2.py3-none-any.whl", hash = "sha256:ffdfce58ea94c6580c77888a86506937f9a1a227dfcd15f245d694ae20a6b6e5"}, {file = "flake8-6.1.0.tar.gz", hash = "sha256:d5b3857f07c030bdb5bf41c7f53799571d75c4491748a3adcd47de929e34cd23"}, @@ -1222,6 +1290,7 @@ version = "0.3.6" description = "flake8 plugin to call black as a code style validator" optional = false python-versions = ">=3.7" +groups = ["dev"] files = [ {file = "flake8-black-0.3.6.tar.gz", hash = "sha256:0dfbca3274777792a5bcb2af887a4cad72c72d0e86c94e08e3a3de151bb41c34"}, {file = "flake8_black-0.3.6-py3-none-any.whl", hash = "sha256:fe8ea2eca98d8a504f22040d9117347f6b367458366952862ac3586e7d4eeaca"}, @@ -1241,6 +1310,7 @@ version = "6.1.2" description = "flake8 plugin that integrates isort" optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "flake8_isort-6.1.2-py3-none-any.whl", hash = "sha256:549197dedf0273502fb74f04c080beed9e62a7eb70244610413d27052e78bd3b"}, {file = "flake8_isort-6.1.2.tar.gz", hash = "sha256:9d0452acdf0e1cd6f2d6848e3605e66b54d920e73471fb4744eef0f93df62d5d"}, @@ -1259,6 +1329,8 @@ version = "4.57.0" description = "Tools to manipulate font files" optional = false python-versions = ">=3.8" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "fonttools-4.57.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:babe8d1eb059a53e560e7bf29f8e8f4accc8b6cfb9b5fd10e485bde77e71ef41"}, {file = "fonttools-4.57.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:81aa97669cd726349eb7bd43ca540cf418b279ee3caba5e2e295fb4e8f841c02"}, @@ -1313,18 +1385,18 @@ files = [ ] [package.extras] -all = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "fs (>=2.2.0,<3)", "lxml (>=4.0)", "lz4 (>=1.7.4.2)", "matplotlib", "munkres", "pycairo", "scipy", "skia-pathops (>=0.5.0)", "sympy", "uharfbuzz (>=0.23.0)", "unicodedata2 (>=15.1.0)", "xattr", "zopfli (>=0.1.4)"] +all = ["brotli (>=1.0.1) ; platform_python_implementation == \"CPython\"", "brotlicffi (>=0.8.0) ; platform_python_implementation != \"CPython\"", "fs (>=2.2.0,<3)", "lxml (>=4.0)", "lz4 (>=1.7.4.2)", "matplotlib", "munkres ; platform_python_implementation == \"PyPy\"", "pycairo", "scipy ; platform_python_implementation != \"PyPy\"", "skia-pathops (>=0.5.0)", "sympy", "uharfbuzz (>=0.23.0)", "unicodedata2 (>=15.1.0) ; python_version <= \"3.12\"", "xattr ; sys_platform == \"darwin\"", "zopfli (>=0.1.4)"] graphite = ["lz4 (>=1.7.4.2)"] -interpolatable = ["munkres", "pycairo", "scipy"] +interpolatable = ["munkres ; platform_python_implementation == \"PyPy\"", "pycairo", "scipy ; platform_python_implementation != \"PyPy\""] lxml = ["lxml (>=4.0)"] pathops = ["skia-pathops (>=0.5.0)"] plot = ["matplotlib"] repacker = ["uharfbuzz (>=0.23.0)"] symfont = ["sympy"] -type1 = ["xattr"] +type1 = ["xattr ; sys_platform == \"darwin\""] ufo = ["fs (>=2.2.0,<3)"] -unicode = ["unicodedata2 (>=15.1.0)"] -woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"] +unicode = ["unicodedata2 (>=15.1.0) ; python_version <= \"3.12\""] +woff = ["brotli (>=1.0.1) ; platform_python_implementation == \"CPython\"", "brotlicffi (>=0.8.0) ; platform_python_implementation != \"CPython\"", "zopfli (>=0.1.4)"] [[package]] name = "fqdn" @@ -1332,6 +1404,7 @@ version = "1.5.1" description = "Validates fully-qualified domain names against RFC 1123, so that they are acceptable to modern bowsers" optional = false python-versions = ">=2.7, !=3.0, !=3.1, !=3.2, !=3.3, !=3.4, <4" +groups = ["main"] files = [ {file = "fqdn-1.5.1-py3-none-any.whl", hash = "sha256:3a179af3761e4df6eb2e026ff9e1a3033d3587bf980a0b1b2e1e5d08d7358014"}, {file = "fqdn-1.5.1.tar.gz", hash = "sha256:105ed3677e767fb5ca086a0c1f4bb66ebc3c100be518f0e0d755d9eae164d89f"}, @@ -1343,6 +1416,8 @@ version = "1.6.0" description = "A list-like structure which implements collections.abc.MutableSequence" optional = false python-versions = ">=3.9" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "frozenlist-1.6.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:e6e558ea1e47fd6fa8ac9ccdad403e5dd5ecc6ed8dda94343056fa4277d5c65e"}, {file = "frozenlist-1.6.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:f4b3cd7334a4bbc0c472164f3744562cb72d05002cc6fcf58adb104630bbc352"}, @@ -1456,6 +1531,8 @@ version = "2025.3.2" description = "File-system specification" optional = false python-versions = ">=3.9" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "fsspec-2025.3.2-py3-none-any.whl", hash = "sha256:2daf8dc3d1dfa65b6aa37748d112773a7a08416f6c70d96b264c96476ecaf711"}, {file = "fsspec-2025.3.2.tar.gz", hash = "sha256:e52c77ef398680bbd6a98c0e628fbc469491282981209907bbc8aea76a04fdc6"}, @@ -1495,6 +1572,7 @@ version = "0.2.3" description = "Python rendering of the OWL Functional syntax" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "funowl-0.2.3-py3-none-any.whl", hash = "sha256:4c4328d03c7815cd61d6691f0fafc78dc9a78ec3dcab4c83afb64d125ad3660e"}, {file = "funowl-0.2.3.tar.gz", hash = "sha256:eecc2f58d792c714f6671a826cb2744e80cd3019fa56b3c8539ce69c8d874126"}, @@ -1514,6 +1592,7 @@ version = "2.1.0" description = "Copy your docs directly to the gh-pages branch." optional = false python-versions = "*" +groups = ["main"] files = [ {file = "ghp-import-2.1.0.tar.gz", hash = "sha256:9c535c4c61193c2df8871222567d7fd7e5014d835f97dc7b7439069e2413d343"}, {file = "ghp_import-2.1.0-py3-none-any.whl", hash = "sha256:8337dd7b50877f163d4c0289bc1f1c7f127550241988d568c1db512c4324a619"}, @@ -1531,6 +1610,7 @@ version = "3.0.0" description = "Python bindings to the Google search engine." optional = false python-versions = "*" +groups = ["main"] files = [ {file = "google-3.0.0-py2.py3-none-any.whl", hash = "sha256:889cf695f84e4ae2c55fbc0cfdaf4c1e729417fa52ab1db0485202ba173e4935"}, {file = "google-3.0.0.tar.gz", hash = "sha256:143530122ee5130509ad5e989f0512f7cb218b2d4eddbafbad40fd10e8d8ccbe"}, @@ -1545,6 +1625,7 @@ version = "2.24.2" description = "Google API client core library" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "google_api_core-2.24.2-py3-none-any.whl", hash = "sha256:810a63ac95f3c441b7c0e43d344e372887f62ce9071ba972eacf32672e072de9"}, {file = "google_api_core-2.24.2.tar.gz", hash = "sha256:81718493daf06d96d6bc76a91c23874dbf2fac0adbbf542831b805ee6e974696"}, @@ -1554,7 +1635,7 @@ files = [ google-auth = ">=2.14.1,<3.0.0" googleapis-common-protos = ">=1.56.2,<2.0.0" proto-plus = [ - {version = ">=1.22.3,<2.0.0", markers = "python_version < \"3.13\""}, + {version = ">=1.22.3,<2.0.0"}, {version = ">=1.25.0,<2.0.0", markers = "python_version >= \"3.13\""}, ] protobuf = ">=3.19.5,<3.20.0 || >3.20.0,<3.20.1 || >3.20.1,<4.21.0 || >4.21.0,<4.21.1 || >4.21.1,<4.21.2 || >4.21.2,<4.21.3 || >4.21.3,<4.21.4 || >4.21.4,<4.21.5 || >4.21.5,<7.0.0" @@ -1562,7 +1643,7 @@ requests = ">=2.18.0,<3.0.0" [package.extras] async-rest = ["google-auth[aiohttp] (>=2.35.0,<3.0.dev0)"] -grpc = ["grpcio (>=1.33.2,<2.0dev)", "grpcio (>=1.49.1,<2.0dev)", "grpcio-status (>=1.33.2,<2.0.dev0)", "grpcio-status (>=1.49.1,<2.0.dev0)"] +grpc = ["grpcio (>=1.33.2,<2.0dev)", "grpcio (>=1.49.1,<2.0dev) ; python_version >= \"3.11\"", "grpcio-status (>=1.33.2,<2.0.dev0)", "grpcio-status (>=1.49.1,<2.0.dev0) ; python_version >= \"3.11\""] grpcgcp = ["grpcio-gcp (>=0.2.2,<1.0.dev0)"] grpcio-gcp = ["grpcio-gcp (>=0.2.2,<1.0.dev0)"] @@ -1572,6 +1653,7 @@ version = "2.167.0" description = "Google API Client Library for Python" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "google_api_python_client-2.167.0-py2.py3-none-any.whl", hash = "sha256:ce25290cc229505d770ca5c8d03850e0ae87d8e998fc6dd743ecece018baa396"}, {file = "google_api_python_client-2.167.0.tar.gz", hash = "sha256:a458d402572e1c2caf9db090d8e7b270f43ff326bd9349c731a86b19910e3995"}, @@ -1590,6 +1672,7 @@ version = "2.39.0" description = "Google Authentication Library" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "google_auth-2.39.0-py2.py3-none-any.whl", hash = "sha256:0150b6711e97fb9f52fe599f55648950cc4540015565d8fbb31be2ad6e1548a2"}, {file = "google_auth-2.39.0.tar.gz", hash = "sha256:73222d43cdc35a3aeacbfdcaf73142a97839f10de930550d89ebfe1d0a00cde7"}, @@ -1603,11 +1686,11 @@ rsa = ">=3.1.4,<5" [package.extras] aiohttp = ["aiohttp (>=3.6.2,<4.0.0)", "requests (>=2.20.0,<3.0.0)"] enterprise-cert = ["cryptography", "pyopenssl"] -pyjwt = ["cryptography (<39.0.0)", "cryptography (>=38.0.3)", "pyjwt (>=2.0)"] -pyopenssl = ["cryptography (<39.0.0)", "cryptography (>=38.0.3)", "pyopenssl (>=20.0.0)"] +pyjwt = ["cryptography (<39.0.0) ; python_version < \"3.8\"", "cryptography (>=38.0.3)", "pyjwt (>=2.0)"] +pyopenssl = ["cryptography (<39.0.0) ; python_version < \"3.8\"", "cryptography (>=38.0.3)", "pyopenssl (>=20.0.0)"] reauth = ["pyu2f (>=0.1.5)"] requests = ["requests (>=2.20.0,<3.0.0)"] -testing = ["aiohttp (<3.10.0)", "aiohttp (>=3.6.2,<4.0.0)", "aioresponses", "cryptography (<39.0.0)", "cryptography (>=38.0.3)", "flask", "freezegun", "grpcio", "mock", "oauth2client", "packaging", "pyjwt (>=2.0)", "pyopenssl (<24.3.0)", "pyopenssl (>=20.0.0)", "pytest", "pytest-asyncio", "pytest-cov", "pytest-localserver", "pyu2f (>=0.1.5)", "requests (>=2.20.0,<3.0.0)", "responses", "urllib3"] +testing = ["aiohttp (<3.10.0)", "aiohttp (>=3.6.2,<4.0.0)", "aioresponses", "cryptography (<39.0.0) ; python_version < \"3.8\"", "cryptography (>=38.0.3)", "flask", "freezegun", "grpcio", "mock", "oauth2client", "packaging", "pyjwt (>=2.0)", "pyopenssl (<24.3.0)", "pyopenssl (>=20.0.0)", "pytest", "pytest-asyncio", "pytest-cov", "pytest-localserver", "pyu2f (>=0.1.5)", "requests (>=2.20.0,<3.0.0)", "responses", "urllib3"] urllib3 = ["packaging", "urllib3"] [[package]] @@ -1616,6 +1699,7 @@ version = "0.2.0" description = "Google Authentication Library: httplib2 transport" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "google-auth-httplib2-0.2.0.tar.gz", hash = "sha256:38aa7badf48f974f1eb9861794e9c0cb2a0511a4ec0679b1f886d108f5640e05"}, {file = "google_auth_httplib2-0.2.0-py2.py3-none-any.whl", hash = "sha256:b65a0a2123300dd71281a7bf6e64d65a0759287df52729bdd1ae2e47dc311a3d"}, @@ -1631,6 +1715,7 @@ version = "1.2.2" description = "Google Authentication Library" optional = false python-versions = ">=3.6" +groups = ["main"] files = [ {file = "google_auth_oauthlib-1.2.2-py3-none-any.whl", hash = "sha256:fd619506f4b3908b5df17b65f39ca8d66ea56986e5472eb5978fd8f3786f00a2"}, {file = "google_auth_oauthlib-1.2.2.tar.gz", hash = "sha256:11046fb8d3348b296302dd939ace8af0a724042e8029c1b872d87fabc9f41684"}, @@ -1649,6 +1734,7 @@ version = "1.70.0" description = "Common protobufs used in Google APIs" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "googleapis_common_protos-1.70.0-py3-none-any.whl", hash = "sha256:b8bfcca8c25a2bb253e0e0b0adaf8c00773e5e6af6fd92397576680b807e0fd8"}, {file = "googleapis_common_protos-1.70.0.tar.gz", hash = "sha256:0e1b44e0ea153e6594f9f394fef15193a68aaaea2d843f83e2742717ca753257"}, @@ -1666,6 +1752,7 @@ version = "0.20.3" description = "Simple Python interface for Graphviz" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "graphviz-0.20.3-py3-none-any.whl", hash = "sha256:81f848f2904515d8cd359cc611faba817598d2feaac4027b266aa3eda7b3dde5"}, {file = "graphviz-0.20.3.zip", hash = "sha256:09d6bc81e6a9fa392e7ba52135a9d49f1ed62526f96499325930e87ca1b5925d"}, @@ -1682,6 +1769,8 @@ version = "3.2.1" description = "Lightweight in-process concurrent programming" optional = false python-versions = ">=3.9" +groups = ["main"] +markers = "python_version < \"3.14\" and (platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\")" files = [ {file = "greenlet-3.2.1-cp310-cp310-macosx_11_0_universal2.whl", hash = "sha256:777c1281aa7c786738683e302db0f55eb4b0077c20f1dc53db8852ffaea0a6b0"}, {file = "greenlet-3.2.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:3059c6f286b53ea4711745146ffe5a5c5ff801f62f6c56949446e0f6461f8157"}, @@ -1750,6 +1839,7 @@ version = "6.2.0" description = "Google Spreadsheets Python API" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "gspread-6.2.0-py3-none-any.whl", hash = "sha256:7fa1a11e1ecacc6c5946fa016be05941baca8540404314f59aec963dd8ae5db3"}, {file = "gspread-6.2.0.tar.gz", hash = "sha256:bc3d02d1c39e0b40bfc8035b4fec407aa71a17f343fc81cc7e3f75bfa6555de6"}, @@ -1765,6 +1855,7 @@ version = "1.2.1" description = "Complete Google Sheets formatting support for gspread worksheets" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "gspread_formatting-1.2.1-py2.py3-none-any.whl", hash = "sha256:76bef0e751dc276bab666351035f15a818866dea5ca20603a34ae6c847333662"}, ] @@ -1778,6 +1869,7 @@ version = "3.10.0" description = "Read and write HDF5 files from Python" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "h5py-3.10.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:b963fb772964fc1d1563c57e4e2e874022ce11f75ddc6df1a626f42bd49ab99f"}, {file = "h5py-3.10.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:012ab448590e3c4f5a8dd0f3533255bc57f80629bf7c5054cf4c87b30085063c"}, @@ -1815,6 +1907,7 @@ version = "0.9.1" description = "Honey Badger reader - a generic file/url/string open and read tool" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "hbreader-0.9.1-py3-none-any.whl", hash = "sha256:9a6e76c9d1afc1b977374a5dc430a1ebb0ea0488205546d4678d6e31cc5f6801"}, {file = "hbreader-0.9.1.tar.gz", hash = "sha256:d2c132f8ba6276d794c66224c3297cec25c8079d0a4cf019c061611e0a3b94fa"}, @@ -1826,6 +1919,7 @@ version = "0.22.0" description = "A comprehensive HTTP client library." optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +groups = ["main"] files = [ {file = "httplib2-0.22.0-py3-none-any.whl", hash = "sha256:14ae0a53c1ba8f3d37e9e27cf37eabb0fb9980f435ba405d546948b009dd64dc"}, {file = "httplib2-0.22.0.tar.gz", hash = "sha256:d7a10bc5ef5ab08322488bde8c726eeee5c8618723fdb399597ec58f3d82df81"}, @@ -1840,6 +1934,7 @@ version = "3.10" description = "Internationalized Domain Names in Applications (IDNA)" optional = false python-versions = ">=3.6" +groups = ["main", "dev"] files = [ {file = "idna-3.10-py3-none-any.whl", hash = "sha256:946d195a0d259cbba61165e88e65941f16e9b36ea6ddb97f00452bae8b1287d3"}, {file = "idna-3.10.tar.gz", hash = "sha256:12f65c9b470abda6dc35cf8e63cc574b1c52b11df2c86030af0ac09b01b13ea9"}, @@ -1854,6 +1949,7 @@ version = "3.3.0" description = "Iterative JSON parser with standard Python iterator interfaces" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "ijson-3.3.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:7f7a5250599c366369fbf3bc4e176f5daa28eb6bc7d6130d02462ed335361675"}, {file = "ijson-3.3.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:f87a7e52f79059f9c58f6886c262061065eb6f7554a587be7ed3aa63e6b71b34"}, @@ -1957,6 +2053,7 @@ version = "1.4.1" description = "Getting image size from png/jpeg/jpeg2000/gif file" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +groups = ["dev"] files = [ {file = "imagesize-1.4.1-py2.py3-none-any.whl", hash = "sha256:0d8d18d08f840c19d0ee7ca1fd82490fdc3729b7ac93f49870406ddde8ef8d8b"}, {file = "imagesize-1.4.1.tar.gz", hash = "sha256:69150444affb9cb0d5cc5a92b3676f0b2fb7cd9ae39e947a5e11a36b4497cd4a"}, @@ -1968,13 +2065,14 @@ version = "6.5.2" description = "Read resources from Python packages" optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "importlib_resources-6.5.2-py3-none-any.whl", hash = "sha256:789cfdc3ed28c78b67a06acb8126751ced69a3d5f79c095a98298cd8a760ccec"}, {file = "importlib_resources-6.5.2.tar.gz", hash = "sha256:185f87adef5bcc288449d98fb4fba07cea78bc036455dd44c5fc4a2fe78fed2c"}, ] [package.extras] -check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)"] +check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1) ; sys_platform != \"cygwin\""] cover = ["pytest-cov"] doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] enabler = ["pytest-enabler (>=2.2)"] @@ -1987,6 +2085,7 @@ version = "7.5.0" description = "Correctly generate plurals, singular nouns, ordinals, indefinite articles" optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "inflect-7.5.0-py3-none-any.whl", hash = "sha256:2aea70e5e70c35d8350b8097396ec155ffd68def678c7ff97f51aa69c1d92344"}, {file = "inflect-7.5.0.tar.gz", hash = "sha256:faf19801c3742ed5a05a8ce388e0d8fe1a07f8d095c82201eb904f5d27ad571f"}, @@ -1997,7 +2096,7 @@ more_itertools = ">=8.5.0" typeguard = ">=4.0.1" [package.extras] -check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)"] +check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1) ; sys_platform != \"cygwin\""] cover = ["pytest-cov"] doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] enabler = ["pytest-enabler (>=2.2)"] @@ -2010,6 +2109,7 @@ version = "2.1.0" description = "brain-dead simple config-ini parsing" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "iniconfig-2.1.0-py3-none-any.whl", hash = "sha256:9deba5723312380e77435581c6bf4935c94cbfab9b1ed33ef8d238ea168eb760"}, {file = "iniconfig-2.1.0.tar.gz", hash = "sha256:3abbd2e30b36733fee78f9c7f7308f2d0050e88f0087fd25c2645f63c773e1c7"}, @@ -2021,6 +2121,7 @@ version = "0.6.1" description = "An ISO 8601 date/time/duration parser and formatter" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "isodate-0.6.1-py2.py3-none-any.whl", hash = "sha256:0751eece944162659049d35f4f549ed815792b38793f07cf73381c1c87cbed96"}, {file = "isodate-0.6.1.tar.gz", hash = "sha256:48c5881de7e8b0a0d648cb024c8062dc84e7b840ed81e864c7614fd3c127bde9"}, @@ -2035,6 +2136,7 @@ version = "20.11.0" description = "Operations with ISO 8601 durations" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "isoduration-20.11.0-py3-none-any.whl", hash = "sha256:b2904c2a4228c3d44f409c8ae8e2370eb21a26f7ac2ec5446df141dde3452042"}, {file = "isoduration-20.11.0.tar.gz", hash = "sha256:ac2f9015137935279eac671f94f89eb00584f940f5dc49462a0c4ee692ba1bd9"}, @@ -2049,6 +2151,7 @@ version = "5.13.2" description = "A Python utility / library to sort Python imports." optional = false python-versions = ">=3.8.0" +groups = ["dev"] files = [ {file = "isort-5.13.2-py3-none-any.whl", hash = "sha256:8ca5e72a8d85860d5a3fa69b8745237f2939afe12dbf656afbcb47fe72d947a6"}, {file = "isort-5.13.2.tar.gz", hash = "sha256:48fdfcb9face5d58a4f6dde2e72a1fb8dcaf8ab26f95ab49fab84c2ddefb0109"}, @@ -2063,6 +2166,7 @@ version = "3.1.6" description = "A very fast and expressive template engine." optional = false python-versions = ">=3.7" +groups = ["main", "dev"] files = [ {file = "jinja2-3.1.6-py3-none-any.whl", hash = "sha256:85ece4451f492d0c13c5dd7c13a64681a86afae63a5f347908daf103ce6d2f67"}, {file = "jinja2-3.1.6.tar.gz", hash = "sha256:0137fb05990d35f1275a587e9aee6d56da821fc83491a0fb838183be43f66d6d"}, @@ -2080,6 +2184,8 @@ version = "1.0.1" description = "JSON Matching Expressions" optional = false python-versions = ">=3.7" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "jmespath-1.0.1-py3-none-any.whl", hash = "sha256:02e2e4cc71b5bcab88332eebf907519190dd9e6e82107fa7f83b1003a6252980"}, {file = "jmespath-1.0.1.tar.gz", hash = "sha256:90261b206d6defd58fdd5e85f478bf633a2901798906be2ad389150c5c60edbe"}, @@ -2091,6 +2197,8 @@ version = "1.4.2" description = "Lightweight pipelining with Python functions" optional = false python-versions = ">=3.8" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "joblib-1.4.2-py3-none-any.whl", hash = "sha256:06d478d5674cbc267e7496a410ee875abd68e4340feff4490bcb7afb88060ae6"}, {file = "joblib-1.4.2.tar.gz", hash = "sha256:2382c5816b2636fbd20a09e0f4e9dad4736765fdfb7dca582943b9c1366b3f0e"}, @@ -2102,6 +2210,7 @@ version = "0.1.9" description = "Python library for denormalizing nested dicts or json objects to tables and back" optional = false python-versions = ">=3.7.0" +groups = ["main"] files = [ {file = "json_flattener-0.1.9-py3-none-any.whl", hash = "sha256:6b027746f08bf37a75270f30c6690c7149d5f704d8af1740c346a3a1236bc941"}, {file = "json_flattener-0.1.9.tar.gz", hash = "sha256:84cf8523045ffb124301a602602201665fcb003a171ece87e6f46ed02f7f0c15"}, @@ -2117,6 +2226,7 @@ version = "1.3.1" description = "JSON as python objects" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "jsonasobj-1.3.1-py3-none-any.whl", hash = "sha256:b9e329dc1ceaae7cf5d5b214684a0b100e0dad0be6d5bbabac281ec35ddeca65"}, {file = "jsonasobj-1.3.1.tar.gz", hash = "sha256:d52e0544a54a08f6ea3f77fa3387271e3648655e0eace2f21e825c26370e44a2"}, @@ -2128,6 +2238,7 @@ version = "1.0.4" description = "JSON as python objects - version 2" optional = false python-versions = ">=3.6" +groups = ["main"] files = [ {file = "jsonasobj2-1.0.4-py3-none-any.whl", hash = "sha256:12e86f86324d54fcf60632db94ea74488d5314e3da554c994fe1e2c6f29acb79"}, {file = "jsonasobj2-1.0.4.tar.gz", hash = "sha256:f50b1668ef478004aa487b2d2d094c304e5cb6b79337809f4a1f2975cc7fbb4e"}, @@ -2142,6 +2253,7 @@ version = "4.0.0" description = "Library with helpers for the jsonlines file format" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "jsonlines-4.0.0-py3-none-any.whl", hash = "sha256:185b334ff2ca5a91362993f42e83588a360cf95ce4b71a73548502bda52a7c55"}, {file = "jsonlines-4.0.0.tar.gz", hash = "sha256:0c6d2c09117550c089995247f605ae4cf77dd1533041d366351f6f298822ea74"}, @@ -2156,6 +2268,7 @@ version = "1.33" description = "Apply JSON-Patches (RFC 6902)" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*" +groups = ["main"] files = [ {file = "jsonpatch-1.33-py2.py3-none-any.whl", hash = "sha256:0ae28c0cd062bbd8b8ecc26d7d164fbbea9652a1a3693f3b956c1eae5145dade"}, {file = "jsonpatch-1.33.tar.gz", hash = "sha256:9fcd4009c41e6d12348b4a0ff2563ba56a2923a7dfee731d004e212e1ee5030c"}, @@ -2170,10 +2283,9 @@ version = "1.7.0" description = "A final implementation of JSONPath for Python that aims to be standard compliant, including arithmetic and binary comparison operators and providing clear AST for metaprogramming." optional = false python-versions = "*" +groups = ["main"] files = [ {file = "jsonpath-ng-1.7.0.tar.gz", hash = "sha256:f6f5f7fd4e5ff79c785f1573b394043b39849fb2bb47bcead935d12b00beab3c"}, - {file = "jsonpath_ng-1.7.0-py2-none-any.whl", hash = "sha256:898c93fc173f0c336784a3fa63d7434297544b7198124a68f9a3ef9597b0ae6e"}, - {file = "jsonpath_ng-1.7.0-py3-none-any.whl", hash = "sha256:f3d7f9e848cba1b6da28c55b1c26ff915dc9e0b1ba7e752a53d6da8d5cbd00b6"}, ] [package.dependencies] @@ -2185,6 +2297,7 @@ version = "3.0.0" description = "Identify specific nodes in a JSON document (RFC 6901)" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "jsonpointer-3.0.0-py2.py3-none-any.whl", hash = "sha256:13e088adc14fca8b6aa8177c044e12701e6ad4b28ff10e65f2267a90109c9942"}, {file = "jsonpointer-3.0.0.tar.gz", hash = "sha256:2b2d729f2091522d61c3b31f82e11870f60b68f43fbc705cb76bf4b832af59ef"}, @@ -2196,6 +2309,7 @@ version = "4.4.0" description = "An implementation of JSON Schema validation for Python" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "jsonschema-4.4.0-py3-none-any.whl", hash = "sha256:77281a1f71684953ee8b3d488371b162419767973789272434bbc3f29d9c8823"}, {file = "jsonschema-4.4.0.tar.gz", hash = "sha256:636694eb41b3535ed608fe04129f26542b59ed99808b4f688aa32dcf55317a83"}, @@ -2223,6 +2337,7 @@ version = "0.5.0" description = "Schema for the KGCL project." optional = false python-versions = ">=3.8,<4.0" +groups = ["main"] files = [ {file = "kgcl_rdflib-0.5.0-py3-none-any.whl", hash = "sha256:214c011eac692384dd18397e455af2a7375f6a2f71fa318df245e8826678f454"}, {file = "kgcl_rdflib-0.5.0.tar.gz", hash = "sha256:19e34690316714b9c500e1749a35d1a0d17282f2a38cd2b1fd3d7d8cf5e6013d"}, @@ -2238,6 +2353,7 @@ version = "0.6.9" description = "Schema for the KGCL project." optional = false python-versions = "<4.0,>=3.9" +groups = ["main"] files = [ {file = "kgcl_schema-0.6.9-py3-none-any.whl", hash = "sha256:6acd367a4cd998ec8dfe70987bf797aecce558df86a1395bc8c3e0489f66b9a9"}, {file = "kgcl_schema-0.6.9.tar.gz", hash = "sha256:1bb0f9f13356df7b5c6ba9c73a7124dc897e525af49f40454dafd45bfca021bd"}, @@ -2255,6 +2371,8 @@ version = "1.4.8" description = "A fast implementation of the Cassowary constraint solver" optional = false python-versions = ">=3.10" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "kiwisolver-1.4.8-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:88c6f252f6816a73b1f8c904f7bbe02fd67c09a69f7cb8a0eecdbf5ce78e63db"}, {file = "kiwisolver-1.4.8-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:c72941acb7b67138f35b879bbe85be0f6c6a70cab78fe3ef6db9c024d9223e5b"}, @@ -2344,6 +2462,7 @@ version = "1.2.2" description = "a modern parsing library" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "lark-1.2.2-py3-none-any.whl", hash = "sha256:c2276486b02f0f1b90be155f2c8ba4a8e194d42775786db622faccd652d8e80c"}, {file = "lark-1.2.2.tar.gz", hash = "sha256:ca807d0162cd16cef15a8feecb862d7319e7a09bdb13aef927968e45040fed80"}, @@ -2361,6 +2480,8 @@ version = "1.4.1" description = "" optional = false python-versions = ">=3.8" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "legacy_api_wrap-1.4.1-py3-none-any.whl", hash = "sha256:8ba214242e836cebfd3b64c1a1653fce955abb0f9e4c7dffb51f2ad014def0eb"}, {file = "legacy_api_wrap-1.4.1.tar.gz", hash = "sha256:9c40d67aa8312fec8763e87cbf28fea4b67710c79ca7a18137b573d150f3b2b4"}, @@ -2375,6 +2496,7 @@ version = "1.7.8" description = "Linked Open Data Modeling Language" optional = false python-versions = "<4.0.0,>=3.8.1" +groups = ["main"] files = [ {file = "linkml-1.7.8-py3-none-any.whl", hash = "sha256:4b8ebe33b422517b08ca01802dc2899ac133c502a71d811c58fa6f4263130709"}, {file = "linkml-1.7.8.tar.gz", hash = "sha256:af48ee1ad6751c8d20de2832dbeefe225da9be5f39a7f8ea7821a691cf7c0148"}, @@ -2417,6 +2539,7 @@ version = "0.1.0" description = "LinkML Data Operations API" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "linkml_dataops-0.1.0-py3-none-any.whl", hash = "sha256:193cf7f659e5f07946d2c2761896910d5f7151d91282543b1363801f68307f4c"}, {file = "linkml_dataops-0.1.0.tar.gz", hash = "sha256:4550eab65e78b70dc3b9c651724a94ac2b1d1edb2fbe576465f1d6951a54ed04"}, @@ -2435,6 +2558,7 @@ version = "0.3.1" description = "linkml-renderer" optional = false python-versions = "<4.0,>=3.8" +groups = ["main"] files = [ {file = "linkml_renderer-0.3.1-py3-none-any.whl", hash = "sha256:3737247ecc349c270b849c55593719fb457b385223ef8f75e7e7b0da11eb12e3"}, {file = "linkml_renderer-0.3.1.tar.gz", hash = "sha256:f600ca96d603e53b7187abe1dc9c417334bd96756d3e4f704a96892f6b28ba5a"}, @@ -2452,6 +2576,7 @@ version = "1.8.3" description = "Runtime environment for LinkML, the Linked open data modeling language" optional = false python-versions = "<4.0,>=3.8" +groups = ["main"] files = [ {file = "linkml_runtime-1.8.3-py3-none-any.whl", hash = "sha256:0750920f1348fffa903d99e7b5834ce425a2a538285aff9068dbd96d05caabd1"}, {file = "linkml_runtime-1.8.3.tar.gz", hash = "sha256:5b7f682eef54aaf0a59c50eeacdb11463b43b124a044caf496cde59936ac05c8"}, @@ -2478,6 +2603,8 @@ version = "0.44.0" description = "lightweight wrapper around basic LLVM functionality" optional = false python-versions = ">=3.10" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "llvmlite-0.44.0-cp310-cp310-macosx_10_14_x86_64.whl", hash = "sha256:9fbadbfba8422123bab5535b293da1cf72f9f478a65645ecd73e781f962ca614"}, {file = "llvmlite-0.44.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:cccf8eb28f24840f2689fb1a45f9c0f7e582dd24e088dcf96e424834af11f791"}, @@ -2508,6 +2635,7 @@ version = "5.4.0" description = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API." optional = false python-versions = ">=3.6" +groups = ["main"] files = [ {file = "lxml-5.4.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:e7bc6df34d42322c5289e37e9971d6ed114e3776b45fa879f734bded9d1fea9c"}, {file = "lxml-5.4.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:6854f8bd8a1536f8a1d9a3655e6354faa6406621cf857dc27b681b69860645c7"}, @@ -2653,6 +2781,7 @@ version = "3.8" description = "Python implementation of John Gruber's Markdown." optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "markdown-3.8-py3-none-any.whl", hash = "sha256:794a929b79c5af141ef5ab0f2f642d0f7b1872981250230e72682346f7cc90dc"}, {file = "markdown-3.8.tar.gz", hash = "sha256:7df81e63f0df5c4b24b7d156eb81e4690595239b7d70937d0409f1b0de319c6f"}, @@ -2668,6 +2797,7 @@ version = "3.0.0" description = "Python port of markdown-it. Markdown parsing, done right!" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "markdown-it-py-3.0.0.tar.gz", hash = "sha256:e3f60a94fa066dc52ec76661e37c851cb232d92f9886b15cb560aaada2df8feb"}, {file = "markdown_it_py-3.0.0-py3-none-any.whl", hash = "sha256:355216845c60bd96232cd8d8c40e8f9765cc86f46880e43a8fd22dc1a1a8cab1"}, @@ -2692,6 +2822,7 @@ version = "3.0.2" description = "Safely add untrusted strings to HTML/XML markup." optional = false python-versions = ">=3.9" +groups = ["main", "dev"] files = [ {file = "MarkupSafe-3.0.2-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:7e94c425039cde14257288fd61dcfb01963e658efbc0ff54f5306b06054700f8"}, {file = "MarkupSafe-3.0.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:9e2d922824181480953426608b81967de705c3cef4d1af983af849d7bd619158"}, @@ -2762,6 +2893,7 @@ version = "3.21.1" description = "A lightweight library for converting complex datatypes to and from native Python datatypes." optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "marshmallow-3.21.1-py3-none-any.whl", hash = "sha256:f085493f79efb0644f270a9bf2892843142d80d7174bbbd2f3713f2a589dc633"}, {file = "marshmallow-3.21.1.tar.gz", hash = "sha256:4e65e9e0d80fc9e609574b9983cf32579f305c718afb30d7233ab818571768c3"}, @@ -2781,6 +2913,8 @@ version = "3.10.1" description = "Python plotting package" optional = false python-versions = ">=3.10" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "matplotlib-3.10.1-cp310-cp310-macosx_10_12_x86_64.whl", hash = "sha256:ff2ae14910be903f4a24afdbb6d7d3a6c44da210fc7d42790b87aeac92238a16"}, {file = "matplotlib-3.10.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:0721a3fd3d5756ed593220a8b86808a36c5031fce489adb5b31ee6dbb47dd5b2"}, @@ -2838,6 +2972,7 @@ version = "0.7.0" description = "McCabe checker, plugin for flake8" optional = false python-versions = ">=3.6" +groups = ["dev"] files = [ {file = "mccabe-0.7.0-py2.py3-none-any.whl", hash = "sha256:6c2d30ab6be0e4a46919781807b4f0d834ebdd6c6e3dca0bda5a15f863427b6e"}, {file = "mccabe-0.7.0.tar.gz", hash = "sha256:348e0240c33b60bbdf4e523192ef919f28cb2c3d7d5c7794f74009290f236325"}, @@ -2849,6 +2984,7 @@ version = "0.4.2" description = "Collection of plugins for markdown-it-py" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "mdit_py_plugins-0.4.2-py3-none-any.whl", hash = "sha256:0c673c3f889399a33b95e88d2f0d111b4447bdfea7f237dab2d488f459835636"}, {file = "mdit_py_plugins-0.4.2.tar.gz", hash = "sha256:5f2cd1fdb606ddf152d37ec30e46101a60512bc0e5fa1a7002c36647b09e26b5"}, @@ -2868,6 +3004,7 @@ version = "0.1.2" description = "Markdown URL utilities" optional = false python-versions = ">=3.7" +groups = ["dev"] files = [ {file = "mdurl-0.1.2-py3-none-any.whl", hash = "sha256:84008a41e51615a49fc9966191ff91509e3c40b939176e643fd50a5c2196b8f8"}, {file = "mdurl-0.1.2.tar.gz", hash = "sha256:bb413d29f5eea38f31dd4754dd7377d4465116fb207585f97bf925588687c1ba"}, @@ -2879,6 +3016,7 @@ version = "1.3.4" description = "A deep merge function for 🐍." optional = false python-versions = ">=3.6" +groups = ["main"] files = [ {file = "mergedeep-1.3.4-py3-none-any.whl", hash = "sha256:70775750742b25c0d8f36c55aed03d24c3384d17c951b3175d898bd778ef0307"}, {file = "mergedeep-1.3.4.tar.gz", hash = "sha256:0096d52e9dad9939c3d975a774666af186eda617e6ca84df4c94dec30004f2a8"}, @@ -2890,6 +3028,7 @@ version = "1.6.1" description = "Project documentation with Markdown." optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "mkdocs-1.6.1-py3-none-any.whl", hash = "sha256:db91759624d1647f3f34aa0c3f327dd2601beae39a366d6e064c03468d35c20e"}, {file = "mkdocs-1.6.1.tar.gz", hash = "sha256:7b432f01d928c084353ab39c57282f29f92136665bdd6abf7c1ec8d822ef86f2"}, @@ -2912,7 +3051,7 @@ watchdog = ">=2.0" [package.extras] i18n = ["babel (>=2.9.0)"] -min-versions = ["babel (==2.9.0)", "click (==7.0)", "colorama (==0.4)", "ghp-import (==1.0)", "importlib-metadata (==4.4)", "jinja2 (==2.11.1)", "markdown (==3.3.6)", "markupsafe (==2.0.1)", "mergedeep (==1.3.4)", "mkdocs-get-deps (==0.2.0)", "packaging (==20.5)", "pathspec (==0.11.1)", "pyyaml (==5.1)", "pyyaml-env-tag (==0.1)", "watchdog (==2.0)"] +min-versions = ["babel (==2.9.0)", "click (==7.0)", "colorama (==0.4) ; platform_system == \"Windows\"", "ghp-import (==1.0)", "importlib-metadata (==4.4) ; python_version < \"3.10\"", "jinja2 (==2.11.1)", "markdown (==3.3.6)", "markupsafe (==2.0.1)", "mergedeep (==1.3.4)", "mkdocs-get-deps (==0.2.0)", "packaging (==20.5)", "pathspec (==0.11.1)", "pyyaml (==5.1)", "pyyaml-env-tag (==0.1)", "watchdog (==2.0)"] [[package]] name = "mkdocs-get-deps" @@ -2920,6 +3059,7 @@ version = "0.2.0" description = "MkDocs extension that lists all dependencies according to a mkdocs.yml file" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "mkdocs_get_deps-0.2.0-py3-none-any.whl", hash = "sha256:2bf11d0b133e77a0dd036abeeb06dec8775e46efa526dc70667d8863eefc6134"}, {file = "mkdocs_get_deps-0.2.0.tar.gz", hash = "sha256:162b3d129c7fad9b19abfdcb9c1458a651628e4b1dea628ac68790fb3061c60c"}, @@ -2936,6 +3076,7 @@ version = "0.1.2" description = "More click." optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "more_click-0.1.2-py3-none-any.whl", hash = "sha256:f6387af37ef7e7423bd94b72a81a53c79c5086a3bfe5cc035da534ff0c2a0a9e"}, {file = "more_click-0.1.2.tar.gz", hash = "sha256:085da66d5a9b823c5d912a888dca1fa0c8b3a14ed1b21ea9c8a1b814857a3981"}, @@ -2953,6 +3094,7 @@ version = "10.7.0" description = "More routines for operating on iterables, beyond itertools" optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "more_itertools-10.7.0-py3-none-any.whl", hash = "sha256:d43980384673cb07d2f7d2d918c616b30c659c089ee23953f601d6609c67510e"}, {file = "more_itertools-10.7.0.tar.gz", hash = "sha256:9fddd5403be01a94b204faadcff459ec3568cf110265d3c54323e1e866ad29d3"}, @@ -2964,6 +3106,8 @@ version = "6.4.3" description = "multidict implementation" optional = false python-versions = ">=3.9" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "multidict-6.4.3-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:32a998bd8a64ca48616eac5a8c1cc4fa38fb244a3facf2eeb14abe186e0f6cc5"}, {file = "multidict-6.4.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:a54ec568f1fc7f3c313c2f3b16e5db346bf3660e1309746e7fccbbfded856188"}, @@ -3080,6 +3224,7 @@ version = "1.1.0" description = "Type system extensions for programs checked with the mypy type checker." optional = false python-versions = ">=3.8" +groups = ["main", "dev"] files = [ {file = "mypy_extensions-1.1.0-py3-none-any.whl", hash = "sha256:1be4cccdb0f2482337c4743e60421de3a356cd97508abadd57d47403e94f5505"}, {file = "mypy_extensions-1.1.0.tar.gz", hash = "sha256:52e68efc3284861e772bbcd66823fde5ae21fd2fdb51c62a211403730b916558"}, @@ -3091,6 +3236,7 @@ version = "3.0.1" description = "An extended [CommonMark](https://spec.commonmark.org/) compliant parser," optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "myst_parser-3.0.1-py3-none-any.whl", hash = "sha256:6457aaa33a5d474aca678b8ead9b3dc298e89c68e67012e73146ea6fd54babf1"}, {file = "myst_parser-3.0.1.tar.gz", hash = "sha256:88f0cb406cb363b077d176b51c476f62d60604d68a8dcdf4832e080441301a87"}, @@ -3117,6 +3263,7 @@ version = "8.4.0" description = "Simple yet flexible natural sorting in Python." optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "natsort-8.4.0-py3-none-any.whl", hash = "sha256:4732914fb471f56b5cce04d7bae6f164a592c7712e1c85f9ef585e197299521c"}, {file = "natsort-8.4.0.tar.gz", hash = "sha256:45312c4a0e5507593da193dedd04abb1469253b601ecaf63445ad80f0a1ea581"}, @@ -3132,6 +3279,7 @@ version = "3.10.0" description = "Nice CX Python includes a client and a data model." optional = false python-versions = "*" +groups = ["main"] files = [ {file = "ndex2-3.10.0-py2.py3-none-any.whl", hash = "sha256:fdb8307ccdbdf49044c9119373852242ca24a4926df1c5566e94965e59b70b67"}, {file = "ndex2-3.10.0.tar.gz", hash = "sha256:7e8cfc3fc940cddfd612810fc8c913ab61e01a43e4f482608e86c6548b81b7e1"}, @@ -3153,6 +3301,7 @@ version = "3.4.2" description = "Python package for creating and manipulating graphs and networks" optional = false python-versions = ">=3.10" +groups = ["main"] files = [ {file = "networkx-3.4.2-py3-none-any.whl", hash = "sha256:df5d4365b724cf81b8c6a7312509d0c22386097011ad1abe274afd5e9d3bbc5f"}, {file = "networkx-3.4.2.tar.gz", hash = "sha256:307c3669428c5362aab27c8a1260aa8f47c4e91d3891f48be0141738d8d053e1"}, @@ -3172,6 +3321,7 @@ version = "0.5.14" description = "Modules to convert numbers to words. Easily extensible." optional = false python-versions = "*" +groups = ["main"] files = [ {file = "num2words-0.5.14-py3-none-any.whl", hash = "sha256:1c8e5b00142fc2966fd8d685001e36c4a9911e070d1b120e1beb721fa1edb33d"}, {file = "num2words-0.5.14.tar.gz", hash = "sha256:b066ec18e56b6616a3b38086b5747daafbaa8868b226a36127e0451c0cf379c6"}, @@ -3186,6 +3336,8 @@ version = "0.61.2" description = "compiling Python code using LLVM" optional = false python-versions = ">=3.10" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "numba-0.61.2-cp310-cp310-macosx_10_14_x86_64.whl", hash = "sha256:cf9f9fc00d6eca0c23fc840817ce9f439b9f03c8f03d6246c0e7f0cb15b7162a"}, {file = "numba-0.61.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:ea0247617edcb5dd61f6106a56255baab031acc4257bddaeddb3a1003b4ca3fd"}, @@ -3220,6 +3372,7 @@ version = "1.26.4" description = "Fundamental package for array computing in Python" optional = false python-versions = ">=3.9" +groups = ["main", "dev"] files = [ {file = "numpy-1.26.4-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:9ff0f4f29c51e2803569d7a51c2304de5554655a60c5d776e35b4a41413830d0"}, {file = "numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:2e4ee3380d6de9c9ec04745830fd9e2eccb3e6cf790d39d7b98ffd19b0dd754a"}, @@ -3265,6 +3418,7 @@ version = "0.6.4" description = "Ontology Access Kit: Python library for common ontology operations over a variety of backends" optional = false python-versions = "<4.0.0,>=3.9" +groups = ["main"] files = [ {file = "oaklib-0.6.4-py3-none-any.whl", hash = "sha256:63210bef42f29182bf07122adaca99f1b93ca5059f0c297652c2e2b202a0c6d0"}, {file = "oaklib-0.6.4.tar.gz", hash = "sha256:eacec3cbeebf13c17fa433c3300dcc232b81da486d038b8d3d2ddaf44fe481e1"}, @@ -3311,6 +3465,7 @@ version = "3.2.2" description = "A generic, spec-compliant, thorough implementation of the OAuth request-signing logic" optional = false python-versions = ">=3.6" +groups = ["main"] files = [ {file = "oauthlib-3.2.2-py3-none-any.whl", hash = "sha256:8139f29aac13e25d502680e9e19963e83f16838d48a0d71c287fe40e7067fbca"}, {file = "oauthlib-3.2.2.tar.gz", hash = "sha256:9859c40929662bec5d64f34d01c99e093149682a3f38915dc0655d5a633dd918"}, @@ -3327,6 +3482,7 @@ version = "0.1.4" description = "A client to the EBI Ontology Lookup Service" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "ols_client-0.1.4-py3-none-any.whl", hash = "sha256:7bdca0590042e07cc7ee3ef3fba99c3b6862cde6c8835afb129de31284b3e010"}, {file = "ols_client-0.1.4.tar.gz", hash = "sha256:cd2a0f39107f39eaf0f40b9098f12d442cf3d43e28228e63feb407d0aeb44470"}, @@ -3349,6 +3505,7 @@ version = "0.3.3" description = "COGS Operates Google Sheets" optional = false python-versions = ">=3.6, <4" +groups = ["main"] files = [ {file = "ontodev-cogs-0.3.3.tar.gz", hash = "sha256:04cf448eda59e0645c6626453f7617a6b2be3129c8586c4d4a515ad031f61a18"}, {file = "ontodev_cogs-0.3.3-py3-none-any.whl", hash = "sha256:b3299b7884891d00e016f9cb0329a1a0dc8af4bfba45dce3815f654360b1f333"}, @@ -3370,6 +3527,7 @@ version = "0.0.4" description = "A client to BioPortal and other OntoPortal instances." optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "ontoportal_client-0.0.4-py3-none-any.whl", hash = "sha256:0dedd4ce003e0b6c1128fa05101e57bcc128ad79a6c9fcae66037d2447706c4c"}, {file = "ontoportal_client-0.0.4.tar.gz", hash = "sha256:1bf7edcb94db3ed68ea9a64c620056f0517f7e209826b05dbfda8fe27384fa48"}, @@ -3389,6 +3547,7 @@ version = "3.1.2" description = "A Python library to read/write Excel 2010 xlsx/xlsm files" optional = false python-versions = ">=3.6" +groups = ["main"] files = [ {file = "openpyxl-3.1.2-py2.py3-none-any.whl", hash = "sha256:f91456ead12ab3c6c2e9491cf33ba6d08357d802192379bb482f1033ade496f5"}, {file = "openpyxl-3.1.2.tar.gz", hash = "sha256:a6f5977418eff3b2d5500d54d9db50c8277a368436f4e4f8ddb1be3422870184"}, @@ -3403,6 +3562,7 @@ version = "4.1.0" description = "An OrderedSet is a custom MutableSet that remembers its order, so that every" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "ordered-set-4.1.0.tar.gz", hash = "sha256:694a8e44c87657c59292ede72891eb91d34131f6531463aab3009191c77364a8"}, {file = "ordered_set-4.1.0-py3-none-any.whl", hash = "sha256:046e1132c71fcf3330438a539928932caf51ddbc582496833e23de611de14562"}, @@ -3417,6 +3577,7 @@ version = "25.0" description = "Core utilities for Python packages" optional = false python-versions = ">=3.8" +groups = ["main", "dev"] files = [ {file = "packaging-25.0-py3-none-any.whl", hash = "sha256:29572ef2b1f17581046b3a2227d5c611fb25ec70ca1ba8554b24b0e69331a484"}, {file = "packaging-25.0.tar.gz", hash = "sha256:d443872c98d677bf60f6a1f2f8c1cb748e8fe762d2bf9d3148b5599295b0fc4f"}, @@ -3428,6 +3589,7 @@ version = "2.2.1" description = "Powerful data structures for data analysis, time series, and statistics" optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "pandas-2.2.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:8df8612be9cd1c7797c93e1c5df861b2ddda0b48b08f2c3eaa0702cf88fb5f88"}, {file = "pandas-2.2.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:0f573ab277252ed9aaf38240f3b54cfc90fff8e5cab70411ee1d03f5d51f3944"}, @@ -3501,6 +3663,7 @@ version = "0.23.1" description = "A light-weight and flexible data validation and testing tool for statistical data objects." optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "pandera-0.23.1-py3-none-any.whl", hash = "sha256:37f75cfb5e34db88afc07adf3ea07ba8738bca709f0e67799c8f1b2fc6b9c977"}, {file = "pandera-0.23.1.tar.gz", hash = "sha256:2afed504ad61bbd2960dc7f85dd6be0b28d230a626f392b8ba05c291b970ae06"}, @@ -3537,6 +3700,7 @@ version = "0.0.1" description = "sqldf for pandas" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "pansql-0.0.1-py3-none-any.whl", hash = "sha256:0c49d8c23e418ac065af767ed350c544c0d6d96dc04e2faa1f8b37851d404988"}, {file = "pansql-0.0.1.tar.gz", hash = "sha256:61091112442c5d663ea5c042b6327a9b6b94c6687831677dddda46f292532e29"}, @@ -3553,6 +3717,7 @@ version = "1.20.2" description = "parse() is the opposite of format()" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "parse-1.20.2-py2.py3-none-any.whl", hash = "sha256:967095588cb802add9177d0c0b6133b5ba33b1ea9007ca800e526f42a85af558"}, {file = "parse-1.20.2.tar.gz", hash = "sha256:b41d604d16503c79d81af5165155c0b20f6c8d6c559efa66b4b695c3e5a0a0ce"}, @@ -3564,6 +3729,7 @@ version = "0.12.1" description = "Utility library for gitignore style pattern matching of file paths." optional = false python-versions = ">=3.8" +groups = ["main", "dev"] files = [ {file = "pathspec-0.12.1-py3-none-any.whl", hash = "sha256:a0d503e138a4c123b27490a4f7beda6a01c6f288df0e4a8b79c7eb0dc7b4cc08"}, {file = "pathspec-0.12.1.tar.gz", hash = "sha256:a482d51503a1ab33b1c67a6c3813a26953dbdc71c31dacaef9a838c4e29f5712"}, @@ -3575,6 +3741,8 @@ version = "1.0.1" description = "A Python package for describing statistical models and for building design matrices." optional = false python-versions = ">=3.6" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "patsy-1.0.1-py2.py3-none-any.whl", hash = "sha256:751fb38f9e97e62312e921a1954b81e1bb2bcda4f5eeabaf94db251ee791509c"}, {file = "patsy-1.0.1.tar.gz", hash = "sha256:e786a9391eec818c054e359b737bbce692f051aee4c661f4141cc88fb459c0c4"}, @@ -3592,6 +3760,8 @@ version = "11.2.1" description = "Python Imaging Library (Fork)" optional = false python-versions = ">=3.9" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "pillow-11.2.1-cp310-cp310-macosx_10_10_x86_64.whl", hash = "sha256:d57a75d53922fc20c165016a20d9c44f73305e67c351bbc60d1adaf662e74047"}, {file = "pillow-11.2.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:127bf6ac4a5b58b3d32fc8289656f77f80567d65660bc46f72c0d77e6600cc95"}, @@ -3682,7 +3852,7 @@ fpx = ["olefile"] mic = ["olefile"] test-arrow = ["pyarrow"] tests = ["check-manifest", "coverage (>=7.4.2)", "defusedxml", "markdown2", "olefile", "packaging", "pyroma", "pytest", "pytest-cov", "pytest-timeout", "trove-classifiers (>=2024.10.12)"] -typing = ["typing-extensions"] +typing = ["typing-extensions ; python_version < \"3.10\""] xmp = ["defusedxml"] [[package]] @@ -3691,6 +3861,7 @@ version = "4.3.7" description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`." optional = false python-versions = ">=3.9" +groups = ["main", "dev"] files = [ {file = "platformdirs-4.3.7-py3-none-any.whl", hash = "sha256:a03875334331946f13c549dbd8f4bac7a13a50a895a0eb1e8c6a8ace80d40a94"}, {file = "platformdirs-4.3.7.tar.gz", hash = "sha256:eb437d586b6a0986388f0d6f74aa0cde27b48d0e3d66843640bfb6bdcdb6e351"}, @@ -3707,6 +3878,7 @@ version = "1.5.0" description = "plugin and hook calling mechanisms for python" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "pluggy-1.5.0-py3-none-any.whl", hash = "sha256:44e1ad92c8ca002de6377e165f3e0f1be63266ab4d554740532335b9d75ea669"}, {file = "pluggy-1.5.0.tar.gz", hash = "sha256:2cffa88e94fdc978c4c574f15f9e59b7f4201d439195c3715ca9e2486f1d0cf1"}, @@ -3722,6 +3894,7 @@ version = "3.11" description = "Python Lex & Yacc" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "ply-3.11-py2.py3-none-any.whl", hash = "sha256:096f9b8350b65ebd2fd1346b12452efe5b9607f7482813ffca50c22722a807ce"}, {file = "ply-3.11.tar.gz", hash = "sha256:00c7c1aaa88358b9c765b6d3000c6eec0ba42abca5351b095321aef446081da3"}, @@ -3733,6 +3906,7 @@ version = "0.1.12" description = "A python API for working with ID prefixes" optional = false python-versions = ">=3.7,<4.0" +groups = ["main"] files = [ {file = "prefixcommons-0.1.12-py3-none-any.whl", hash = "sha256:16dbc0a1f775e003c724f19a694fcfa3174608f5c8b0e893d494cf8098ac7f8b"}, {file = "prefixcommons-0.1.12.tar.gz", hash = "sha256:22c4e2d37b63487b3ab48f0495b70f14564cb346a15220f23919eb0c1851f69f"}, @@ -3750,6 +3924,7 @@ version = "0.2.6" description = "A python library for retrieving semantic prefix maps" optional = false python-versions = "<4.0,>=3.8" +groups = ["main"] files = [ {file = "prefixmaps-0.2.6-py3-none-any.whl", hash = "sha256:f6cef28a7320fc6337cf411be212948ce570333a0ce958940ef684c7fb192a62"}, {file = "prefixmaps-0.2.6.tar.gz", hash = "sha256:7421e1244eea610217fa1ba96c9aebd64e8162a930dc0626207cd8bf62ecf4b9"}, @@ -3765,6 +3940,7 @@ version = "2.7.0" description = "Python frontend to ontologies." optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "pronto-2.7.0-py3-none-any.whl", hash = "sha256:da4fb4a6fd67ed7958cc3fc02ad0360ef81e48d2282b8e3fb9715209fcc64952"}, {file = "pronto-2.7.0.tar.gz", hash = "sha256:8454b89094f20eb74b3dadfd23d09ac3722a47d40c6ef3f6a1b462bc3faa030b"}, @@ -3782,6 +3958,8 @@ version = "0.3.1" description = "Accelerated property cache" optional = false python-versions = ">=3.9" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "propcache-0.3.1-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:f27785888d2fdd918bc36de8b8739f2d6c791399552333721b58193f68ea3e98"}, {file = "propcache-0.3.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:d4e89cde74154c7b5957f87a355bb9c8ec929c167b59c83d90654ea36aeb6180"}, @@ -3889,6 +4067,7 @@ version = "1.26.1" description = "Beautiful, Pythonic protocol buffers" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "proto_plus-1.26.1-py3-none-any.whl", hash = "sha256:13285478c2dcf2abb829db158e1047e2f1e8d63a077d94263c2b88b043c75a66"}, {file = "proto_plus-1.26.1.tar.gz", hash = "sha256:21a515a4c4c0088a773899e23c7bbade3d18f9c66c73edd4c7ee3816bc96a012"}, @@ -3906,6 +4085,7 @@ version = "6.30.2" description = "" optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "protobuf-6.30.2-cp310-abi3-win32.whl", hash = "sha256:b12ef7df7b9329886e66404bef5e9ce6a26b54069d7f7436a0853ccdeb91c103"}, {file = "protobuf-6.30.2-cp310-abi3-win_amd64.whl", hash = "sha256:7653c99774f73fe6b9301b87da52af0e69783a2e371e8b599b3e9cb4da4b12b9"}, @@ -3924,6 +4104,7 @@ version = "2.9.5" description = "psycopg2 - Python-PostgreSQL Database Adapter" optional = false python-versions = ">=3.6" +groups = ["main"] files = [ {file = "psycopg2-binary-2.9.5.tar.gz", hash = "sha256:33e632d0885b95a8b97165899006c40e9ecdc634a529dca7b991eb7de4ece41c"}, {file = "psycopg2_binary-2.9.5-cp310-cp310-macosx_10_15_x86_64.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl", hash = "sha256:0775d6252ccb22b15da3b5d7adbbf8cfe284916b14b6dc0ff503a23edb01ee85"}, @@ -4004,6 +4185,8 @@ version = "19.0.1" description = "Python library for Apache Arrow" optional = false python-versions = ">=3.9" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "pyarrow-19.0.1-cp310-cp310-macosx_12_0_arm64.whl", hash = "sha256:fc28912a2dc924dddc2087679cc8b7263accc71b9ff025a1362b004711661a69"}, {file = "pyarrow-19.0.1-cp310-cp310-macosx_12_0_x86_64.whl", hash = "sha256:fca15aabbe9b8355800d923cc2e82c8ef514af321e18b437c3d782aa884eaeec"}, @@ -4058,6 +4241,8 @@ version = "0.6" description = "" optional = false python-versions = ">=3.5" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "pyarrow_hotfix-0.6-py3-none-any.whl", hash = "sha256:dcc9ae2d220dff0083be6a9aa8e0cdee5182ad358d4931fce825c545e5c89178"}, {file = "pyarrow_hotfix-0.6.tar.gz", hash = "sha256:79d3e030f7ff890d408a100ac16d6f00b14d44a502d7897cd9fc3e3a534e9945"}, @@ -4069,6 +4254,7 @@ version = "0.6.1" description = "Pure-Python implementation of ASN.1 types and DER/BER/CER codecs (X.208)" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "pyasn1-0.6.1-py3-none-any.whl", hash = "sha256:0d632f46f2ba09143da3a8afe9e33fb6f92fa2320ab7e886e2d0f7672af84629"}, {file = "pyasn1-0.6.1.tar.gz", hash = "sha256:6f580d2bdd84365380830acf45550f2511469f673cb4a5ae3857a3170128b034"}, @@ -4080,6 +4266,7 @@ version = "0.4.2" description = "A collection of ASN.1-based protocols modules" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "pyasn1_modules-0.4.2-py3-none-any.whl", hash = "sha256:29253a9207ce32b64c3ac6600edc75368f98473906e8fd1043bd6b5b1de2c14a"}, {file = "pyasn1_modules-0.4.2.tar.gz", hash = "sha256:677091de870a80aae844b1ca6134f54652fa2c8c5a52aa396440ac3106e941e6"}, @@ -4094,6 +4281,7 @@ version = "2.11.1" description = "Python style guide checker" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "pycodestyle-2.11.1-py2.py3-none-any.whl", hash = "sha256:44fe31000b2d866f2e41841b18528a505fbd7fef9017b04eff4e2648a0fadc67"}, {file = "pycodestyle-2.11.1.tar.gz", hash = "sha256:41ba0e7afc9752dfb53ced5489e89f8186be00e599e712660695b7a75ff2663f"}, @@ -4105,6 +4293,7 @@ version = "2.11.3" description = "Data validation using Python type hints" optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "pydantic-2.11.3-py3-none-any.whl", hash = "sha256:a082753436a07f9ba1289c6ffa01cd93db3548776088aa917cc43b63f68fa60f"}, {file = "pydantic-2.11.3.tar.gz", hash = "sha256:7471657138c16adad9322fe3070c0116dd6c3ad8d649300e3cbdfe91f4db4ec3"}, @@ -4119,7 +4308,7 @@ typing-inspection = ">=0.4.0" [package.extras] email = ["email-validator (>=2.0.0)"] -timezone = ["tzdata"] +timezone = ["tzdata ; python_version >= \"3.9\" and platform_system == \"Windows\""] [[package]] name = "pydantic-core" @@ -4127,6 +4316,7 @@ version = "2.33.1" description = "Core functionality for Pydantic validation and serialization" optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "pydantic_core-2.33.1-cp310-cp310-macosx_10_12_x86_64.whl", hash = "sha256:3077cfdb6125cc8dab61b155fdd714663e401f0e6883f9632118ec12cf42df26"}, {file = "pydantic_core-2.33.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:8ffab8b2908d152e74862d276cf5017c81a2f3719f14e8e3e8d6b83fda863927"}, @@ -4238,6 +4428,7 @@ version = "3.1.0" description = "passive checker of Python programs" optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "pyflakes-3.1.0-py2.py3-none-any.whl", hash = "sha256:4132f6d49cb4dae6819e5379898f2b8cce3c5f23994194c24b77d5da2e36f774"}, {file = "pyflakes-3.1.0.tar.gz", hash = "sha256:a0aae034c444db0071aa077972ba4768d40c830d9539fd45bf4cd3f8f6992efc"}, @@ -4249,6 +4440,7 @@ version = "2.19.1" description = "Pygments is a syntax highlighting package written in Python." optional = false python-versions = ">=3.8" +groups = ["dev"] files = [ {file = "pygments-2.19.1-py3-none-any.whl", hash = "sha256:9ea1544ad55cecf4b8242fab6dd35a93bbce657034b0611ee383099054ab6d8c"}, {file = "pygments-2.19.1.tar.gz", hash = "sha256:61c16d2a8576dc0649d9f39e089b5f02bcd27fba10d8fb4dcc28173f7a45151f"}, @@ -4263,6 +4455,7 @@ version = "0.11.10" description = "Python JSON Schema Grammar interpreter" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "PyJSG-0.11.10-py3-none-any.whl", hash = "sha256:10af60ff42219be7e85bf7f11c19b648715b0b29eb2ddbd269e87069a7c3f26d"}, {file = "PyJSG-0.11.10.tar.gz", hash = "sha256:4bd6e3ff2833fa2b395bbe803a2d72a5f0bab5b7285bccd0da1a1bc0aee88bfa"}, @@ -4278,6 +4471,8 @@ version = "0.5.13" description = "Nearest Neighbor Descent" optional = false python-versions = "*" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "pynndescent-0.5.13-py3-none-any.whl", hash = "sha256:69aabb8f394bc631b6ac475a1c7f3994c54adf3f51cd63b2730fefba5771b949"}, {file = "pynndescent-0.5.13.tar.gz", hash = "sha256:d74254c0ee0a1eeec84597d5fe89fedcf778593eeabe32c2f97412934a9800fb"}, @@ -4296,6 +4491,7 @@ version = "3.2.3" description = "pyparsing module - Classes and methods to define and execute parsing grammars" optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "pyparsing-3.2.3-py3-none-any.whl", hash = "sha256:a749938e02d6fd0b59b356ca504a24982314bb090c383e3cf201c95ef7e2bfcf"}, {file = "pyparsing-3.2.3.tar.gz", hash = "sha256:b9c13f1ab8b3b542f72e28f634bad4de758ab3ce4546e4301970ad6fa77c38be"}, @@ -4310,6 +4506,7 @@ version = "0.20.0" description = "Persistent/Functional/Immutable data structures" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "pyrsistent-0.20.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:8c3aba3e01235221e5b229a6c05f585f344734bd1ad42a8ac51493d74722bbce"}, {file = "pyrsistent-0.20.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:c1beb78af5423b879edaf23c5591ff292cf7c33979734c99aa66d5914ead880f"}, @@ -4351,6 +4548,7 @@ version = "0.8.1" description = "Python ShEx Implementation" optional = false python-versions = ">=3.6" +groups = ["main"] files = [ {file = "PyShEx-0.8.1-py3-none-any.whl", hash = "sha256:6da1b10123e191abf8dcb6bf3e54aa3e1fcf771df5d1a0ed453217c8900c8e6a"}, {file = "PyShEx-0.8.1.tar.gz", hash = "sha256:3c5c4d45fe27faaadae803cb008c41acf8ee784da7868b04fd84967e75be70d0"}, @@ -4373,6 +4571,7 @@ version = "0.9.1" description = "PyShExC - Python ShEx compiler" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "PyShExC-0.9.1-py2.py3-none-any.whl", hash = "sha256:efc55ed5cb2453e9df569b03e282505e96bb06597934288f3b23dd980ef10028"}, {file = "PyShExC-0.9.1.tar.gz", hash = "sha256:35a9975d4b9afeb20ef710fb6680871756381d0c39fbb5470b3b506581a304d3"}, @@ -4392,6 +4591,7 @@ version = "3.10.0" description = "Lightweight Python client for Apache Solr" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "pysolr-3.10.0.tar.gz", hash = "sha256:127b4a2dd169234acb1586643a6cd1e3e94b917921e69bf569d7b2a2aa0ef409"}, ] @@ -4409,6 +4609,7 @@ version = "0.7.0" description = "Easily pick a place to store data for your Python code" optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "pystow-0.7.0-py3-none-any.whl", hash = "sha256:5b6ed4b322a625f0163471f76989bae3b870fd20d64fed55a9150c68d34eb39d"}, {file = "pystow-0.7.0.tar.gz", hash = "sha256:5f8935a76d5f03b0645bedbe5dfcb3b777a0e755fda3e3fd3e4be7a1d2d058d0"}, @@ -4434,6 +4635,7 @@ version = "8.3.5" description = "pytest: simple powerful testing with Python" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "pytest-8.3.5-py3-none-any.whl", hash = "sha256:c69214aa47deac29fad6c2a4f590b9c4a9fdb16a403176fe154b79c0b4d4d820"}, {file = "pytest-8.3.5.tar.gz", hash = "sha256:f4efe70cc14e511565ac476b57c279e12a855b11f48f212af1080ef2263d3845"}, @@ -4456,6 +4658,7 @@ version = "2015.11.4" description = "Configures logging and allows tweaking the log level with a py.test flag" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "pytest-logging-2015.11.4.tar.gz", hash = "sha256:cec5c85ecf18aab7b2ead5498a31b9f758680ef5a902b9054ab3f2bdbb77c896"}, ] @@ -4469,6 +4672,7 @@ version = "2.9.0" description = "Extensions to the standard Python datetime module" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" +groups = ["main"] files = [ {file = "python-dateutil-2.9.0.tar.gz", hash = "sha256:78e73e19c63f5b20ffa567001531680d939dc042bf7850431877645523c66709"}, {file = "python_dateutil-2.9.0-py2.py3-none-any.whl", hash = "sha256:cbf2f1da5e6083ac2fbfd4da39a25f34312230110440f424a14c7558bb85d82e"}, @@ -4483,6 +4687,7 @@ version = "0.4.0" description = "A pure Python implementation of the trie data structure." optional = false python-versions = "*" +groups = ["main"] files = [ {file = "PyTrie-0.4.0-py3-none-any.whl", hash = "sha256:f687c224ee8c66cda8e8628a903011b692635ffbb08d4b39c5f92b18eb78c950"}, {file = "PyTrie-0.4.0.tar.gz", hash = "sha256:8f4488f402d3465993fb6b6efa09866849ed8cda7903b50647b7d0342b805379"}, @@ -4497,6 +4702,7 @@ version = "2025.2" description = "World timezone definitions, modern and historical" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "pytz-2025.2-py2.py3-none-any.whl", hash = "sha256:5ddf76296dd8c44c26eb8f4b6f35488f3ccbf6fbbd7adee0b7262d43f0ec2f00"}, {file = "pytz-2025.2.tar.gz", hash = "sha256:360b9e3dbb49a209c21ad61809c7fb453643e048b38924c765813546746e81c3"}, @@ -4508,6 +4714,7 @@ version = "6.0.2" description = "YAML parser and emitter for Python" optional = false python-versions = ">=3.8" +groups = ["main", "dev"] files = [ {file = "PyYAML-6.0.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:0a9a2848a5b7feac301353437eb7d5957887edbf81d56e903999a75a3d743086"}, {file = "PyYAML-6.0.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:29717114e51c84ddfba879543fb232a6ed60086602313ca38cce623c1d62cfbf"}, @@ -4570,6 +4777,7 @@ version = "0.1" description = "A custom YAML tag for referencing environment variables in YAML files. " optional = false python-versions = ">=3.6" +groups = ["main"] files = [ {file = "pyyaml_env_tag-0.1-py3-none-any.whl", hash = "sha256:af31106dec8a4d68c60207c1886031cbf839b68aa7abccdb19868200532c2069"}, {file = "pyyaml_env_tag-0.1.tar.gz", hash = "sha256:70092675bda14fdec33b31ba77e7543de9ddc88f2e5b99160396572d11525bdb"}, @@ -4584,6 +4792,7 @@ version = "0.9.2" description = "Extract quantities from unstructured text." optional = false python-versions = "*" +groups = ["main"] files = [ {file = "quantulum3-0.9.2-py3-none-any.whl", hash = "sha256:bc56c2ee9c96a391b1660d0134d401515e6ea676cbd1a05d8e75195917216077"}, {file = "quantulum3-0.9.2.tar.gz", hash = "sha256:797b5d94c52d23107010838fbf2d3bb4f15630f4e90556401bdb042a1c12fc1e"}, @@ -4602,6 +4811,7 @@ version = "2.2.1" description = "API rate limit decorator" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "ratelimit-2.2.1.tar.gz", hash = "sha256:af8a9b64b821529aca09ebaf6d8d279100d766f19e90b5059ac6a718ca6dee42"}, ] @@ -4612,6 +4822,7 @@ version = "7.0.0" description = "RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information." optional = false python-versions = ">=3.8.1,<4.0.0" +groups = ["main"] files = [ {file = "rdflib-7.0.0-py3-none-any.whl", hash = "sha256:0438920912a642c866a513de6fe8a0001bd86ef975057d6962c79ce4771687cd"}, {file = "rdflib-7.0.0.tar.gz", hash = "sha256:9995eb8569428059b8c1affd26b25eac510d64f5043d9ce8c84e0d0036e995ae"}, @@ -4633,6 +4844,7 @@ version = "0.6.1" description = "rdflib extension adding JSON-LD parser and serializer" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "rdflib-jsonld-0.6.1.tar.gz", hash = "sha256:eda5a42a2e09f80d4da78e32b5c684bccdf275368f1541e6b7bcddfb1382a0e0"}, {file = "rdflib_jsonld-0.6.1-py2.py3-none-any.whl", hash = "sha256:bcf84317e947a661bae0a3f2aee1eced697075fc4ac4db6065a3340ea0f10fc2"}, @@ -4647,6 +4859,7 @@ version = "1.0.3" description = "Shim for rdflib 5 and 6 incompatibilities" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "rdflib_shim-1.0.3-py3-none-any.whl", hash = "sha256:7a853e7750ef1e9bf4e35dea27d54e02d4ed087de5a9e0c329c4a6d82d647081"}, {file = "rdflib_shim-1.0.3.tar.gz", hash = "sha256:d955d11e2986aab42b6830ca56ac6bc9c893abd1d049a161c6de2f1b99d4fc0d"}, @@ -4662,6 +4875,7 @@ version = "2.32.3" description = "Python HTTP for Humans." optional = false python-versions = ">=3.8" +groups = ["main", "dev"] files = [ {file = "requests-2.32.3-py3-none-any.whl", hash = "sha256:70761cfe03c773ceb22aa2f671b4757976145175cdfca038c02654d061d6dcc6"}, {file = "requests-2.32.3.tar.gz", hash = "sha256:55365417734eb18255590a9ff9eb97e9e1da868d4ccd6402399eaf68af20a760"}, @@ -4683,6 +4897,7 @@ version = "1.2.1" description = "A persistent cache for python requests" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "requests_cache-1.2.1-py3-none-any.whl", hash = "sha256:1285151cddf5331067baa82598afe2d47c7495a1334bfe7a7d329b43e9fd3603"}, {file = "requests_cache-1.2.1.tar.gz", hash = "sha256:68abc986fdc5b8d0911318fbb5f7c80eebcd4d01bfacc6685ecf8876052511d1"}, @@ -4713,6 +4928,7 @@ version = "2.0.0" description = "OAuthlib authentication support for Requests." optional = false python-versions = ">=3.4" +groups = ["main"] files = [ {file = "requests-oauthlib-2.0.0.tar.gz", hash = "sha256:b3dffaebd884d8cd778494369603a9e7b58d29111bf6b41bdc2dcd87203af4e9"}, {file = "requests_oauthlib-2.0.0-py2.py3-none-any.whl", hash = "sha256:7dd8a5c40426b779b0868c404bdef9768deccf22749cde15852df527e6269b36"}, @@ -4731,6 +4947,7 @@ version = "1.0.0" description = "A utility belt for advanced users of python-requests" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +groups = ["main"] files = [ {file = "requests-toolbelt-1.0.0.tar.gz", hash = "sha256:7681a0a3d047012b5bdc0ee37d7f8f07ebe76ab08caeccfc3921ce23c88d5bc6"}, {file = "requests_toolbelt-1.0.0-py2.py3-none-any.whl", hash = "sha256:cccfdd665f0a24fcf4726e690f65639d272bb0637b9b92dfd91a5568ccf6bd06"}, @@ -4745,6 +4962,7 @@ version = "0.1.4" description = "A pure python RFC3339 validator" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +groups = ["main"] files = [ {file = "rfc3339_validator-0.1.4-py2.py3-none-any.whl", hash = "sha256:24f6ec1eda14ef823da9e36ec7113124b39c04d50a4d3d3a3c2859577e7791fa"}, {file = "rfc3339_validator-0.1.4.tar.gz", hash = "sha256:138a2abdf93304ad60530167e51d2dfb9549521a836871b88d7f4695d0022f6b"}, @@ -4759,6 +4977,7 @@ version = "1.3.8" description = "Parsing and validation of URIs (RFC 3986) and IRIs (RFC 3987)" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "rfc3987-1.3.8-py2.py3-none-any.whl", hash = "sha256:10702b1e51e5658843460b189b185c0366d2cf4cff716f13111b0ea9fd2dce53"}, {file = "rfc3987-1.3.8.tar.gz", hash = "sha256:d3c4d257a560d544e9826b38bc81db676890c79ab9d7ac92b39c7a253d5ca733"}, @@ -4770,6 +4989,7 @@ version = "4.9.1" description = "Pure-Python RSA implementation" optional = false python-versions = "<4,>=3.6" +groups = ["main"] files = [ {file = "rsa-4.9.1-py3-none-any.whl", hash = "sha256:68635866661c6836b8d39430f97a996acbd61bfa49406748ea243539fe239762"}, {file = "rsa-4.9.1.tar.gz", hash = "sha256:e7bdbfdb5497da4c07dfd35530e1a902659db6ff241e39d9953cad06ebd0ae75"}, @@ -4784,6 +5004,7 @@ version = "0.18.6" description = "ruamel.yaml is a YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "ruamel.yaml-0.18.6-py3-none-any.whl", hash = "sha256:57b53ba33def16c4f3d807c0ccbc00f8a6081827e81ba2491691b76882d0c636"}, {file = "ruamel.yaml-0.18.6.tar.gz", hash = "sha256:8b27e6a217e786c6fbe5634d8f3f11bc63e0f80f6a5890f28863d9c45aac311b"}, @@ -4802,6 +5023,8 @@ version = "0.2.12" description = "C version of reader, parser and emitter for ruamel.yaml derived from libyaml" optional = false python-versions = ">=3.9" +groups = ["main"] +markers = "platform_python_implementation == \"CPython\" and python_version <= \"3.12\"" files = [ {file = "ruamel.yaml.clib-0.2.12-cp310-cp310-macosx_13_0_arm64.whl", hash = "sha256:11f891336688faf5156a36293a9c362bdc7c88f03a8a027c2c1d8e0bcde998e5"}, {file = "ruamel.yaml.clib-0.2.12-cp310-cp310-manylinux2014_aarch64.whl", hash = "sha256:a606ef75a60ecf3d924613892cc603b154178ee25abb3055db5062da811fd969"}, @@ -4809,7 +5032,6 @@ files = [ {file = "ruamel.yaml.clib-0.2.12-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:f66efbc1caa63c088dead1c4170d148eabc9b80d95fb75b6c92ac0aad2437d76"}, {file = "ruamel.yaml.clib-0.2.12-cp310-cp310-musllinux_1_1_i686.whl", hash = "sha256:22353049ba4181685023b25b5b51a574bce33e7f51c759371a7422dcae5402a6"}, {file = "ruamel.yaml.clib-0.2.12-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:932205970b9f9991b34f55136be327501903f7c66830e9760a8ffb15b07f05cd"}, - {file = "ruamel.yaml.clib-0.2.12-cp310-cp310-musllinux_1_2_aarch64.whl", hash = "sha256:a52d48f4e7bf9005e8f0a89209bf9a73f7190ddf0489eee5eb51377385f59f2a"}, {file = "ruamel.yaml.clib-0.2.12-cp310-cp310-win32.whl", hash = "sha256:3eac5a91891ceb88138c113f9db04f3cebdae277f5d44eaa3651a4f573e6a5da"}, {file = "ruamel.yaml.clib-0.2.12-cp310-cp310-win_amd64.whl", hash = "sha256:ab007f2f5a87bd08ab1499bdf96f3d5c6ad4dcfa364884cb4549aa0154b13a28"}, {file = "ruamel.yaml.clib-0.2.12-cp311-cp311-macosx_13_0_arm64.whl", hash = "sha256:4a6679521a58256a90b0d89e03992c15144c5f3858f40d7c18886023d7943db6"}, @@ -4818,7 +5040,6 @@ files = [ {file = "ruamel.yaml.clib-0.2.12-cp311-cp311-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:811ea1594b8a0fb466172c384267a4e5e367298af6b228931f273b111f17ef52"}, {file = "ruamel.yaml.clib-0.2.12-cp311-cp311-musllinux_1_1_i686.whl", hash = "sha256:cf12567a7b565cbf65d438dec6cfbe2917d3c1bdddfce84a9930b7d35ea59642"}, {file = "ruamel.yaml.clib-0.2.12-cp311-cp311-musllinux_1_1_x86_64.whl", hash = "sha256:7dd5adc8b930b12c8fc5b99e2d535a09889941aa0d0bd06f4749e9a9397c71d2"}, - {file = "ruamel.yaml.clib-0.2.12-cp311-cp311-musllinux_1_2_aarch64.whl", hash = "sha256:1492a6051dab8d912fc2adeef0e8c72216b24d57bd896ea607cb90bb0c4981d3"}, {file = "ruamel.yaml.clib-0.2.12-cp311-cp311-win32.whl", hash = "sha256:bd0a08f0bab19093c54e18a14a10b4322e1eacc5217056f3c063bd2f59853ce4"}, {file = "ruamel.yaml.clib-0.2.12-cp311-cp311-win_amd64.whl", hash = "sha256:a274fb2cb086c7a3dea4322ec27f4cb5cc4b6298adb583ab0e211a4682f241eb"}, {file = "ruamel.yaml.clib-0.2.12-cp312-cp312-macosx_14_0_arm64.whl", hash = "sha256:20b0f8dc160ba83b6dcc0e256846e1a02d044e13f7ea74a3d1d56ede4e48c632"}, @@ -4827,7 +5048,6 @@ files = [ {file = "ruamel.yaml.clib-0.2.12-cp312-cp312-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:749c16fcc4a2b09f28843cda5a193e0283e47454b63ec4b81eaa2242f50e4ccd"}, {file = "ruamel.yaml.clib-0.2.12-cp312-cp312-musllinux_1_1_i686.whl", hash = "sha256:bf165fef1f223beae7333275156ab2022cffe255dcc51c27f066b4370da81e31"}, {file = "ruamel.yaml.clib-0.2.12-cp312-cp312-musllinux_1_1_x86_64.whl", hash = "sha256:32621c177bbf782ca5a18ba4d7af0f1082a3f6e517ac2a18b3974d4edf349680"}, - {file = "ruamel.yaml.clib-0.2.12-cp312-cp312-musllinux_1_2_aarch64.whl", hash = "sha256:b82a7c94a498853aa0b272fd5bc67f29008da798d4f93a2f9f289feb8426a58d"}, {file = "ruamel.yaml.clib-0.2.12-cp312-cp312-win32.whl", hash = "sha256:e8c4ebfcfd57177b572e2040777b8abc537cdef58a2120e830124946aa9b42c5"}, {file = "ruamel.yaml.clib-0.2.12-cp312-cp312-win_amd64.whl", hash = "sha256:0467c5965282c62203273b838ae77c0d29d7638c8a4e3a1c8bdd3602c10904e4"}, {file = "ruamel.yaml.clib-0.2.12-cp313-cp313-macosx_14_0_arm64.whl", hash = "sha256:4c8c5d82f50bb53986a5e02d1b3092b03622c02c2eb78e29bec33fd9593bae1a"}, @@ -4836,7 +5056,6 @@ files = [ {file = "ruamel.yaml.clib-0.2.12-cp313-cp313-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:96777d473c05ee3e5e3c3e999f5d23c6f4ec5b0c38c098b3a5229085f74236c6"}, {file = "ruamel.yaml.clib-0.2.12-cp313-cp313-musllinux_1_1_i686.whl", hash = "sha256:3bc2a80e6420ca8b7d3590791e2dfc709c88ab9152c00eeb511c9875ce5778bf"}, {file = "ruamel.yaml.clib-0.2.12-cp313-cp313-musllinux_1_1_x86_64.whl", hash = "sha256:e188d2699864c11c36cdfdada94d781fd5d6b0071cd9c427bceb08ad3d7c70e1"}, - {file = "ruamel.yaml.clib-0.2.12-cp313-cp313-musllinux_1_2_aarch64.whl", hash = "sha256:4f6f3eac23941b32afccc23081e1f50612bdbe4e982012ef4f5797986828cd01"}, {file = "ruamel.yaml.clib-0.2.12-cp313-cp313-win32.whl", hash = "sha256:6442cb36270b3afb1b4951f060eccca1ce49f3d087ca1ca4563a6eb479cb3de6"}, {file = "ruamel.yaml.clib-0.2.12-cp313-cp313-win_amd64.whl", hash = "sha256:e5b8daf27af0b90da7bb903a876477a9e6d7270be6146906b276605997c7e9a3"}, {file = "ruamel.yaml.clib-0.2.12-cp39-cp39-macosx_12_0_arm64.whl", hash = "sha256:fc4b630cd3fa2cf7fce38afa91d7cfe844a9f75d7f0f36393fa98815e911d987"}, @@ -4845,7 +5064,6 @@ files = [ {file = "ruamel.yaml.clib-0.2.12-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:e2f1c3765db32be59d18ab3953f43ab62a761327aafc1594a2a1fbe038b8b8a7"}, {file = "ruamel.yaml.clib-0.2.12-cp39-cp39-musllinux_1_1_i686.whl", hash = "sha256:d85252669dc32f98ebcd5d36768f5d4faeaeaa2d655ac0473be490ecdae3c285"}, {file = "ruamel.yaml.clib-0.2.12-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:e143ada795c341b56de9418c58d028989093ee611aa27ffb9b7f609c00d813ed"}, - {file = "ruamel.yaml.clib-0.2.12-cp39-cp39-musllinux_1_2_aarch64.whl", hash = "sha256:2c59aa6170b990d8d2719323e628aaf36f3bfbc1c26279c0eeeb24d05d2d11c7"}, {file = "ruamel.yaml.clib-0.2.12-cp39-cp39-win32.whl", hash = "sha256:beffaed67936fbbeffd10966a4eb53c402fafd3d6833770516bf7314bc6ffa12"}, {file = "ruamel.yaml.clib-0.2.12-cp39-cp39-win_amd64.whl", hash = "sha256:040ae85536960525ea62868b642bdb0c2cc6021c9f9d507810c0c604e66f5a7b"}, {file = "ruamel.yaml.clib-0.2.12.tar.gz", hash = "sha256:6c8fbb13ec503f99a91901ab46e0b07ae7941cd527393187039aec586fdfd36f"}, @@ -4857,6 +5075,8 @@ version = "2025.3.2" description = "Convenient Filesystem interface over S3" optional = false python-versions = ">=3.9" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "s3fs-2025.3.2-py3-none-any.whl", hash = "sha256:81eae3f37b4b04bcc08845d7bcc607c6ca45878813ef7e6a28d77b2688417130"}, {file = "s3fs-2025.3.2.tar.gz", hash = "sha256:6798f896ec76dd3bfd8beb89f0bb7c5263cb2760e038bae0978505cd172a307c"}, @@ -4877,6 +5097,8 @@ version = "1.11.1" description = "Single-Cell Analysis in Python." optional = false python-versions = ">=3.10" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "scanpy-1.11.1-py3-none-any.whl", hash = "sha256:7eeed12b1221699dc5cc6fd9a52022d26e031118ed88d93cceccbd980c1d59b0"}, {file = "scanpy-1.11.1.tar.gz", hash = "sha256:4a88692f631d80f1b6a91d660a443d9534876173a0de236f25397ee396c2cace"}, @@ -4930,6 +5152,7 @@ version = "0.5.1" description = "Infer models, enrich with meaning for terms including enum permissible values" optional = false python-versions = "<4.0,>=3.9" +groups = ["main"] files = [ {file = "schema_automator-0.5.1-py3-none-any.whl", hash = "sha256:a6ef277810a1ced1cde263151e3615d27f589fc04e64b2c07729d51715a0fdc2"}, {file = "schema_automator-0.5.1.tar.gz", hash = "sha256:5ef617e8b1bce801e02d3a5b327849658a06f797ea73ca7a16772658fcb42270"}, @@ -4963,6 +5186,7 @@ version = "0.3.1" description = "Package to author schemas using spreadsheets" optional = false python-versions = "<4.0,>=3.9" +groups = ["main"] files = [ {file = "schemasheets-0.3.1-py3-none-any.whl", hash = "sha256:a42562b5002c3854daf4f3c4c50e91a8c613e6784761358d763d044ef35d2fb1"}, {file = "schemasheets-0.3.1.tar.gz", hash = "sha256:4b5a3dcff03899835e3fefb6fbecc86d33d58e8ded3fd9087c314365da885aa0"}, @@ -4981,6 +5205,8 @@ version = "1.5.2" description = "A set of python modules for machine learning and data mining" optional = false python-versions = ">=3.9" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "scikit_learn-1.5.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:299406827fb9a4f862626d0fe6c122f5f87f8910b86fe5daa4c32dcd742139b6"}, {file = "scikit_learn-1.5.2-cp310-cp310-macosx_12_0_arm64.whl", hash = "sha256:2d4cad1119c77930b235579ad0dc25e65c917e756fe80cab96aa3b9428bd3fb0"}, @@ -4997,11 +5223,6 @@ files = [ {file = "scikit_learn-1.5.2-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:f60021ec1574e56632be2a36b946f8143bf4e5e6af4a06d85281adc22938e0dd"}, {file = "scikit_learn-1.5.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:394397841449853c2290a32050382edaec3da89e35b3e03d6cc966aebc6a8ae6"}, {file = "scikit_learn-1.5.2-cp312-cp312-win_amd64.whl", hash = "sha256:57cc1786cfd6bd118220a92ede80270132aa353647684efa385a74244a41e3b1"}, - {file = "scikit_learn-1.5.2-cp313-cp313-macosx_10_13_x86_64.whl", hash = "sha256:e9a702e2de732bbb20d3bad29ebd77fc05a6b427dc49964300340e4c9328b3f5"}, - {file = "scikit_learn-1.5.2-cp313-cp313-macosx_12_0_arm64.whl", hash = "sha256:b0768ad641981f5d3a198430a1d31c3e044ed2e8a6f22166b4d546a5116d7908"}, - {file = "scikit_learn-1.5.2-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:178ddd0a5cb0044464fc1bfc4cca5b1833bfc7bb022d70b05db8530da4bb3dd3"}, - {file = "scikit_learn-1.5.2-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f7284ade780084d94505632241bf78c44ab3b6f1e8ccab3d2af58e0e950f9c12"}, - {file = "scikit_learn-1.5.2-cp313-cp313-win_amd64.whl", hash = "sha256:b7b0f9a0b1040830d38c39b91b3a44e1b643f4b36e36567b80b7c6bd2202a27f"}, {file = "scikit_learn-1.5.2-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:757c7d514ddb00ae249832fe87100d9c73c6ea91423802872d9e74970a0e40b9"}, {file = "scikit_learn-1.5.2-cp39-cp39-macosx_12_0_arm64.whl", hash = "sha256:52788f48b5d8bca5c0736c175fa6bdaab2ef00a8f536cda698db61bd89c551c1"}, {file = "scikit_learn-1.5.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:643964678f4b5fbdc95cbf8aec638acc7aa70f5f79ee2cdad1eec3df4ba6ead8"}, @@ -5031,6 +5252,7 @@ version = "1.15.2" description = "Fundamental algorithms for scientific computing in Python" optional = false python-versions = ">=3.10" +groups = ["main", "dev"] files = [ {file = "scipy-1.15.2-cp310-cp310-macosx_10_13_x86_64.whl", hash = "sha256:a2ec871edaa863e8213ea5df811cd600734f6400b4af272e1c011e69401218e9"}, {file = "scipy-1.15.2-cp310-cp310-macosx_12_0_arm64.whl", hash = "sha256:6f223753c6ea76983af380787611ae1291e3ceb23917393079dcc746ba60cfb5"}, @@ -5086,7 +5308,7 @@ numpy = ">=1.23.5,<2.5" [package.extras] dev = ["cython-lint (>=0.12.2)", "doit (>=0.36.0)", "mypy (==1.10.0)", "pycodestyle", "pydevtool", "rich-click", "ruff (>=0.0.292)", "types-psutil", "typing_extensions"] doc = ["intersphinx_registry", "jupyterlite-pyodide-kernel", "jupyterlite-sphinx (>=0.16.5)", "jupytext", "matplotlib (>=3.5)", "myst-nb", "numpydoc", "pooch", "pydata-sphinx-theme (>=0.15.2)", "sphinx (>=5.0.0,<8.0.0)", "sphinx-copybutton", "sphinx-design (>=0.4.0)"] -test = ["Cython", "array-api-strict (>=2.0,<2.1.1)", "asv", "gmpy2", "hypothesis (>=6.30)", "meson", "mpmath", "ninja", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"] +test = ["Cython", "array-api-strict (>=2.0,<2.1.1)", "asv", "gmpy2", "hypothesis (>=6.30)", "meson", "mpmath", "ninja ; sys_platform != \"emscripten\"", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"] [[package]] name = "seaborn" @@ -5094,6 +5316,8 @@ version = "0.13.2" description = "Statistical data visualization" optional = false python-versions = ">=3.8" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "seaborn-0.13.2-py3-none-any.whl", hash = "sha256:636f8336facf092165e27924f223d3c62ca560b1f2bb5dff7ab7fad265361987"}, {file = "seaborn-0.13.2.tar.gz", hash = "sha256:93e60a40988f4d65e9f4885df477e2fdaff6b73a9ded434c1ab356dd57eefff7"}, @@ -5115,6 +5339,7 @@ version = "0.4.0" description = "" optional = false python-versions = "<4.0.0,>=3.8.1" +groups = ["main"] files = [ {file = "semsql-0.4.0-py3-none-any.whl", hash = "sha256:a8e5be068a5d6b8b6fd86884019f7054a59a9178592cd149b90bc23ca9f4bf1b"}, {file = "semsql-0.4.0.tar.gz", hash = "sha256:89a3273e3595036a190c7d1bb779a8e144996582d131d9757c5ffbbb8029a3ce"}, @@ -5131,6 +5356,8 @@ version = "0.1.2" description = "Print versions of imported packages." optional = false python-versions = ">=3.10" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "session_info2-0.1.2-py3-none-any.whl", hash = "sha256:8f5c010b621930556eee640f6a71d76f0c746ed1194b27ad227e6fe6e61883d4"}, {file = "session_info2-0.1.2.tar.gz", hash = "sha256:bdb75885128333611e0cf4357f31a0b5869bcb7889b93251ed8571aa4e4ad0b6"}, @@ -5148,19 +5375,20 @@ version = "79.0.0" description = "Easily download, build, install, upgrade, and uninstall Python packages" optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "setuptools-79.0.0-py3-none-any.whl", hash = "sha256:b9ab3a104bedb292323f53797b00864e10e434a3ab3906813a7169e4745b912a"}, {file = "setuptools-79.0.0.tar.gz", hash = "sha256:9828422e7541213b0aacb6e10bbf9dd8febeaa45a48570e09b6d100e063fc9f9"}, ] [package.extras] -check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)", "ruff (>=0.8.0)"] -core = ["importlib_metadata (>=6)", "jaraco.functools (>=4)", "jaraco.text (>=3.7)", "more_itertools", "more_itertools (>=8.8)", "packaging (>=24.2)", "platformdirs (>=4.2.2)", "tomli (>=2.0.1)", "wheel (>=0.43.0)"] +check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1) ; sys_platform != \"cygwin\"", "ruff (>=0.8.0) ; sys_platform != \"cygwin\""] +core = ["importlib_metadata (>=6) ; python_version < \"3.10\"", "jaraco.functools (>=4)", "jaraco.text (>=3.7)", "more_itertools", "more_itertools (>=8.8)", "packaging (>=24.2)", "platformdirs (>=4.2.2)", "tomli (>=2.0.1) ; python_version < \"3.11\"", "wheel (>=0.43.0)"] cover = ["pytest-cov"] doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "pyproject-hooks (!=1.1)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier", "towncrier (<24.7)"] enabler = ["pytest-enabler (>=2.2)"] -test = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "ini2toml[lite] (>=0.14)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.7.2)", "jaraco.test (>=5.5)", "packaging (>=24.2)", "pip (>=19.1)", "pyproject-hooks (!=1.1)", "pytest (>=6,!=8.1.*)", "pytest-home (>=0.5)", "pytest-perf", "pytest-subprocess", "pytest-timeout", "pytest-xdist (>=3)", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel (>=0.44.0)"] -type = ["importlib_metadata (>=7.0.2)", "jaraco.develop (>=7.21)", "mypy (==1.14.*)", "pytest-mypy"] +test = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "ini2toml[lite] (>=0.14)", "jaraco.develop (>=7.21) ; python_version >= \"3.9\" and sys_platform != \"cygwin\"", "jaraco.envs (>=2.2)", "jaraco.path (>=3.7.2)", "jaraco.test (>=5.5)", "packaging (>=24.2)", "pip (>=19.1)", "pyproject-hooks (!=1.1)", "pytest (>=6,!=8.1.*)", "pytest-home (>=0.5)", "pytest-perf ; sys_platform != \"cygwin\"", "pytest-subprocess", "pytest-timeout", "pytest-xdist (>=3)", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel (>=0.44.0)"] +type = ["importlib_metadata (>=7.0.2) ; python_version < \"3.10\"", "jaraco.develop (>=7.21) ; sys_platform != \"cygwin\"", "mypy (==1.14.*)", "pytest-mypy"] [[package]] name = "shapely" @@ -5168,6 +5396,8 @@ version = "2.1.0" description = "Manipulation and analysis of geometric objects" optional = false python-versions = ">=3.10" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "shapely-2.1.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:d3e5c5e3864d4dc431dd85a8e5137ebd39c8ac287b009d3fa80a07017b29c940"}, {file = "shapely-2.1.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:d6eea89b16f5f3a064659126455d23fa3066bc3d6cd385c35214f06bf5871aa6"}, @@ -5225,6 +5455,7 @@ version = "0.8.2" description = "ShExJSG - Astract Syntax Tree for the ShEx 2.0 language" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "ShExJSG-0.8.2-py2.py3-none-any.whl", hash = "sha256:3b0d8432dd313bee9e1343382c5e02e9908dd941a7dd7342bf8c0200fe523766"}, {file = "ShExJSG-0.8.2.tar.gz", hash = "sha256:f17a629fc577fa344382bdee143cd9ff86588537f9f811f66cea6f63cdbcd0b6"}, @@ -5239,6 +5470,7 @@ version = "1.17.0" description = "Python 2 and 3 compatibility utilities" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" +groups = ["main"] files = [ {file = "six-1.17.0-py2.py3-none-any.whl", hash = "sha256:4721f391ed90541fddacab5acf947aa0d3dc7d27b2e1e8eda2be8970586c3274"}, {file = "six-1.17.0.tar.gz", hash = "sha256:ff70335d468e7eb6ec65b95b99d3a2836546063f63acc5171de367e834932a81"}, @@ -5250,6 +5482,7 @@ version = "2.2.0" description = "This package provides 29 stemmers for 28 languages generated from Snowball algorithms." optional = false python-versions = "*" +groups = ["dev"] files = [ {file = "snowballstemmer-2.2.0-py2.py3-none-any.whl", hash = "sha256:c8e1716e83cc398ae16824e5572ae04e0d9fc2c6b985fb0f900f5f0c96ecba1a"}, {file = "snowballstemmer-2.2.0.tar.gz", hash = "sha256:09b16deb8547d3412ad7b590689584cd0fe25ec8db3be37788be3810cbf19cb1"}, @@ -5261,6 +5494,8 @@ version = "1.0.28" description = "Python-language API specification and base utilities for implementation of the SOMA system." optional = false python-versions = ">=3.9" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "somacore-1.0.28-py3-none-any.whl", hash = "sha256:5aae5f2af05a15fdbf14f96bc54007104ba564ed3ef74908e63d0df446a9cda5"}, {file = "somacore-1.0.28.tar.gz", hash = "sha256:ae58dc26ca93b4e1537d420dc7a868e172d13177fa1afdf3e55aec49b12edd3d"}, @@ -5286,6 +5521,7 @@ version = "2.4.0" description = "Sorted Containers -- Sorted List, Sorted Dict, Sorted Set" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "sortedcontainers-2.4.0-py2.py3-none-any.whl", hash = "sha256:a163dcaede0f1c021485e957a39245190e74249897e2ae4b2aa38595db237ee0"}, {file = "sortedcontainers-2.4.0.tar.gz", hash = "sha256:25caa5a06cc30b6b83d11423433f65d1f9d76c4c6a0c90e3379eaa43b9bfdb88"}, @@ -5297,6 +5533,7 @@ version = "2.7" description = "A modern CSS selector implementation for Beautiful Soup." optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "soupsieve-2.7-py3-none-any.whl", hash = "sha256:6e60cc5c1ffaf1cebcc12e8188320b72071e922c2e897f737cadce79ad5d30c4"}, {file = "soupsieve-2.7.tar.gz", hash = "sha256:ad282f9b6926286d2ead4750552c8a6142bc4c783fd66b0293547c8fe6ae126a"}, @@ -5308,6 +5545,7 @@ version = "0.5.1" description = "SPARQL Slurper for rdflib" optional = false python-versions = ">=3.7.4" +groups = ["main"] files = [ {file = "sparqlslurper-0.5.1-py3-none-any.whl", hash = "sha256:ae49b2d8ce3dd38df7a40465b228ad5d33fb7e11b3f248d195f9cadfc9cfff87"}, {file = "sparqlslurper-0.5.1.tar.gz", hash = "sha256:9282ebb064fc6152a58269d194cb1e7b275b0f095425a578d75b96dcc851f546"}, @@ -5324,6 +5562,7 @@ version = "2.0.0" description = "SPARQL Endpoint interface to Python" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "SPARQLWrapper-2.0.0-py3-none-any.whl", hash = "sha256:c99a7204fff676ee28e6acef327dc1ff8451c6f7217dcd8d49e8872f324a8a20"}, {file = "SPARQLWrapper-2.0.0.tar.gz", hash = "sha256:3fed3ebcc77617a4a74d2644b86fd88e0f32e7f7003ac7b2b334c026201731f1"}, @@ -5344,6 +5583,7 @@ version = "7.3.5" description = "Python documentation generator" optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "sphinx-7.3.5-py3-none-any.whl", hash = "sha256:e6a8f418321429669ef9c1e20c1f294b3fe1f248206b46044c86e1545480687f"}, {file = "sphinx-7.3.5.tar.gz", hash = "sha256:30d03bbaa53b77d38863fd6b95cc4edb4a84a1512787b3b0c12fb3b4fb25d9e9"}, @@ -5379,6 +5619,7 @@ version = "2.3.0" description = "Type hints (PEP 484) support for the Sphinx autodoc extension" optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "sphinx_autodoc_typehints-2.3.0-py3-none-any.whl", hash = "sha256:3098e2c6d0ba99eacd013eb06861acc9b51c6e595be86ab05c08ee5506ac0c67"}, {file = "sphinx_autodoc_typehints-2.3.0.tar.gz", hash = "sha256:535c78ed2d6a1bad393ba9f3dfa2602cf424e2631ee207263e07874c38fde084"}, @@ -5398,6 +5639,7 @@ version = "0.5.2" description = "Add a copy button to each of your code cells." optional = false python-versions = ">=3.7" +groups = ["dev"] files = [ {file = "sphinx-copybutton-0.5.2.tar.gz", hash = "sha256:4cf17c82fb9646d1bc9ca92ac280813a3b605d8c421225fd9913154103ee1fbd"}, {file = "sphinx_copybutton-0.5.2-py3-none-any.whl", hash = "sha256:fb543fd386d917746c9a2c50360c7905b605726b9355cd26e9974857afeae06e"}, @@ -5416,6 +5658,7 @@ version = "1.3.0" description = "Read the Docs theme for Sphinx" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7" +groups = ["dev"] files = [ {file = "sphinx_rtd_theme-1.3.0-py2.py3-none-any.whl", hash = "sha256:46ddef89cc2416a81ecfbeaceab1881948c014b1b6e4450b815311a89fb977b0"}, {file = "sphinx_rtd_theme-1.3.0.tar.gz", hash = "sha256:590b030c7abb9cf038ec053b95e5380b5c70d61591eb0b552063fbe7c41f0931"}, @@ -5435,6 +5678,7 @@ version = "2.0.0" description = "sphinxcontrib-applehelp is a Sphinx extension which outputs Apple help books" optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "sphinxcontrib_applehelp-2.0.0-py3-none-any.whl", hash = "sha256:4cd3f0ec4ac5dd9c17ec65e9ab272c9b867ea77425228e68ecf08d6b28ddbdb5"}, {file = "sphinxcontrib_applehelp-2.0.0.tar.gz", hash = "sha256:2f29ef331735ce958efa4734873f084941970894c6090408b079c61b2e1c06d1"}, @@ -5451,6 +5695,7 @@ version = "2.0.0" description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp documents" optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "sphinxcontrib_devhelp-2.0.0-py3-none-any.whl", hash = "sha256:aefb8b83854e4b0998877524d1029fd3e6879210422ee3780459e28a1f03a8a2"}, {file = "sphinxcontrib_devhelp-2.0.0.tar.gz", hash = "sha256:411f5d96d445d1d73bb5d52133377b4248ec79db5c793ce7dbe59e074b4dd1ad"}, @@ -5467,6 +5712,7 @@ version = "2.1.0" description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files" optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl", hash = "sha256:166759820b47002d22914d64a075ce08f4c46818e17cfc9470a9786b759b19f8"}, {file = "sphinxcontrib_htmlhelp-2.1.0.tar.gz", hash = "sha256:c9e2916ace8aad64cc13a0d233ee22317f2b9025b9cf3295249fa985cc7082e9"}, @@ -5483,6 +5729,7 @@ version = "4.1" description = "Extension to include jQuery on newer Sphinx releases" optional = false python-versions = ">=2.7" +groups = ["dev"] files = [ {file = "sphinxcontrib-jquery-4.1.tar.gz", hash = "sha256:1620739f04e36a2c779f1a131a2dfd49b2fd07351bf1968ced074365933abc7a"}, {file = "sphinxcontrib_jquery-4.1-py2.py3-none-any.whl", hash = "sha256:f936030d7d0147dd026a4f2b5a57343d233f1fc7b363f68b3d4f1cb0993878ae"}, @@ -5497,6 +5744,7 @@ version = "1.0.1" description = "A sphinx extension which renders display math in HTML via JavaScript" optional = false python-versions = ">=3.5" +groups = ["dev"] files = [ {file = "sphinxcontrib-jsmath-1.0.1.tar.gz", hash = "sha256:a9925e4a4587247ed2191a22df5f6970656cb8ca2bd6284309578f2153e0c4b8"}, {file = "sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl", hash = "sha256:2ec2eaebfb78f3f2078e73666b1415417a116cc848b72e5172e596c871103178"}, @@ -5511,6 +5759,7 @@ version = "2.0.0" description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp documents" optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "sphinxcontrib_qthelp-2.0.0-py3-none-any.whl", hash = "sha256:b18a828cdba941ccd6ee8445dbe72ffa3ef8cbe7505d8cd1fa0d42d3f2d5f3eb"}, {file = "sphinxcontrib_qthelp-2.0.0.tar.gz", hash = "sha256:4fe7d0ac8fc171045be623aba3e2a8f613f8682731f9153bb2e40ece16b9bbab"}, @@ -5527,6 +5776,7 @@ version = "2.0.0" description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)" optional = false python-versions = ">=3.9" +groups = ["dev"] files = [ {file = "sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl", hash = "sha256:6e2cb0eef194e10c27ec0023bfeb25badbbb5868244cf5bc5bdc04e4464bf331"}, {file = "sphinxcontrib_serializinghtml-2.0.0.tar.gz", hash = "sha256:e9d912827f872c029017a53f0ef2180b327c3f7fd23c87229f7a8e8b70031d4d"}, @@ -5543,6 +5793,7 @@ version = "2.0.40" description = "Database Abstraction Library" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "SQLAlchemy-2.0.40-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:ae9597cab738e7cc823f04a704fb754a9249f0b6695a6aeb63b74055cd417a96"}, {file = "SQLAlchemy-2.0.40-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:37a5c21ab099a83d669ebb251fddf8f5cee4d75ea40a5a1653d9c43d60e20867"}, @@ -5638,6 +5889,7 @@ version = "0.38.3" description = "Various utility functions for SQLAlchemy." optional = false python-versions = "~=3.6" +groups = ["main"] files = [ {file = "SQLAlchemy-Utils-0.38.3.tar.gz", hash = "sha256:9f9afba607a40455cf703adfa9846584bf26168a0c5a60a70063b70d65051f4d"}, {file = "SQLAlchemy_Utils-0.38.3-py3-none-any.whl", hash = "sha256:5c13b5d08adfaa85f3d4e8ec09a75136216fad41346980d02974a70a77988bf9"}, @@ -5655,8 +5907,8 @@ intervals = ["intervals (>=0.7.1)"] password = ["passlib (>=1.6,<2.0)"] pendulum = ["pendulum (>=2.0.5)"] phone = ["phonenumbers (>=5.9.2)"] -test = ["Jinja2 (>=2.3)", "Pygments (>=1.2)", "backports.zoneinfo", "docutils (>=0.10)", "flake8 (>=2.4.0)", "flexmock (>=0.9.7)", "isort (>=4.2.2)", "pg8000 (>=1.12.4)", "psycopg2 (>=2.5.1)", "psycopg2cffi (>=2.8.1)", "pymysql", "pyodbc", "pytest (>=2.7.1)", "python-dateutil (>=2.6)", "pytz (>=2014.2)"] -test-all = ["Babel (>=1.3)", "Jinja2 (>=2.3)", "Pygments (>=1.2)", "arrow (>=0.3.4)", "backports.zoneinfo", "colour (>=0.0.4)", "cryptography (>=0.6)", "docutils (>=0.10)", "flake8 (>=2.4.0)", "flexmock (>=0.9.7)", "furl (>=0.4.1)", "intervals (>=0.7.1)", "isort (>=4.2.2)", "passlib (>=1.6,<2.0)", "pendulum (>=2.0.5)", "pg8000 (>=1.12.4)", "phonenumbers (>=5.9.2)", "psycopg2 (>=2.5.1)", "psycopg2cffi (>=2.8.1)", "pymysql", "pyodbc", "pytest (>=2.7.1)", "python-dateutil", "python-dateutil (>=2.6)", "pytz (>=2014.2)"] +test = ["Jinja2 (>=2.3)", "Pygments (>=1.2)", "backports.zoneinfo ; python_version < \"3.9\"", "docutils (>=0.10)", "flake8 (>=2.4.0)", "flexmock (>=0.9.7)", "isort (>=4.2.2)", "pg8000 (>=1.12.4)", "psycopg2 (>=2.5.1)", "psycopg2cffi (>=2.8.1)", "pymysql", "pyodbc", "pytest (>=2.7.1)", "python-dateutil (>=2.6)", "pytz (>=2014.2)"] +test-all = ["Babel (>=1.3)", "Jinja2 (>=2.3)", "Pygments (>=1.2)", "arrow (>=0.3.4)", "backports.zoneinfo ; python_version < \"3.9\"", "colour (>=0.0.4)", "cryptography (>=0.6)", "docutils (>=0.10)", "flake8 (>=2.4.0)", "flexmock (>=0.9.7)", "furl (>=0.4.1)", "intervals (>=0.7.1)", "isort (>=4.2.2)", "passlib (>=1.6,<2.0)", "pendulum (>=2.0.5)", "pg8000 (>=1.12.4)", "phonenumbers (>=5.9.2)", "psycopg2 (>=2.5.1)", "psycopg2cffi (>=2.8.1)", "pymysql", "pyodbc", "pytest (>=2.7.1)", "python-dateutil", "python-dateutil (>=2.6)", "pytz (>=2014.2)"] timezone = ["python-dateutil"] url = ["furl (>=0.4.1)"] @@ -5666,6 +5918,7 @@ version = "0.4.11" description = "Operations on SSSOM mapping tables" optional = false python-versions = "<4.0,>=3.8" +groups = ["main"] files = [ {file = "sssom-0.4.11-py3-none-any.whl", hash = "sha256:4642f126a6ec8a4201bef77107a5ac76ed69b8f624014b5b77e56745969c0f76"}, {file = "sssom-0.4.11.tar.gz", hash = "sha256:5043390657a396f9e5d064e5788990a52ec19c395c6380514abfe01b85a5eebc"}, @@ -5693,6 +5946,7 @@ version = "0.15.2" description = "SSSOM is a Simple Standard for Sharing Ontology Mappings." optional = false python-versions = "<4.0,>=3.8" +groups = ["main"] files = [ {file = "sssom_schema-0.15.2-py3-none-any.whl", hash = "sha256:41112586160d5e57a7cfedab22dfd0c21d1e3e1a86805f7fe31918a9b664ca15"}, {file = "sssom_schema-0.15.2.tar.gz", hash = "sha256:c759ee8f9e4a7e5e8249b58198189b2e48e297ff31a918d4af64a89ed30938da"}, @@ -5707,6 +5961,8 @@ version = "0.14.4" description = "Statistical computations and models for Python" optional = false python-versions = ">=3.9" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "statsmodels-0.14.4-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:7a62f1fc9086e4b7ee789a6f66b3c0fc82dd8de1edda1522d30901a0aa45e42b"}, {file = "statsmodels-0.14.4-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:46ac7ddefac0c9b7b607eed1d47d11e26fe92a1bc1f4d9af48aeed4e21e87981"}, @@ -5749,7 +6005,7 @@ scipy = ">=1.8,<1.9.2 || >1.9.2" [package.extras] build = ["cython (>=3.0.10)"] -develop = ["colorama", "cython (>=3.0.10)", "cython (>=3.0.10,<4)", "flake8", "isort", "joblib", "matplotlib (>=3)", "pytest (>=7.3.0,<8)", "pytest-cov", "pytest-randomly", "pytest-xdist", "pywinpty", "setuptools-scm[toml] (>=8.0,<9.0)"] +develop = ["colorama", "cython (>=3.0.10)", "cython (>=3.0.10,<4)", "flake8", "isort", "joblib", "matplotlib (>=3)", "pytest (>=7.3.0,<8)", "pytest-cov", "pytest-randomly", "pytest-xdist", "pywinpty ; os_name == \"nt\"", "setuptools-scm[toml] (>=8.0,<9.0)"] docs = ["ipykernel", "jupyter-client", "matplotlib", "nbconvert", "nbformat", "numpydoc", "pandas-datareader", "sphinx"] [[package]] @@ -5758,6 +6014,7 @@ version = "0.2.1" description = "A library implementing different string similarity and distance measures" optional = false python-versions = "*" +groups = ["main"] files = [ {file = "strsimpy-0.2.1-py3-none-any.whl", hash = "sha256:d676a440d5d3dbcf5ba92d01814a03a218776ce07bd7a8185da7019e04cf9ba7"}, {file = "strsimpy-0.2.1.tar.gz", hash = "sha256:0842eb57f7af86c882a59a1bc8721ec2580a267e563fd0503ced2972040372c9"}, @@ -5769,6 +6026,7 @@ version = "0.9.0" description = "Pretty-print tabular data" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "tabulate-0.9.0-py3-none-any.whl", hash = "sha256:024ca478df22e9340661486f85298cff5f6dcdba14f3813e8830015b9ed1948f"}, {file = "tabulate-0.9.0.tar.gz", hash = "sha256:0095b12bf5966de529c0feb1fa08671671b3368eec77d7ef7ab114be2c068b3c"}, @@ -5783,6 +6041,7 @@ version = "8.5.0" description = "Retry code until it succeeds" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "tenacity-8.5.0-py3-none-any.whl", hash = "sha256:b594c2a5945830c267ce6b79a166228323ed52718f30302c1359836112346687"}, {file = "tenacity-8.5.0.tar.gz", hash = "sha256:8bc6c0c8a09b31e6cad13c47afbed1a567518250a9a171418582ed8d9c20ca78"}, @@ -5798,6 +6057,7 @@ version = "3.0.1" description = "ANSI color formatting for output in terminal" optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "termcolor-3.0.1-py3-none-any.whl", hash = "sha256:da1ed4ec8a5dc5b2e17476d859febdb3cccb612be1c36e64511a6f2485c10c69"}, {file = "termcolor-3.0.1.tar.gz", hash = "sha256:a6abd5c6e1284cea2934443ba806e70e5ec8fd2449021be55c280f8a3731b611"}, @@ -5812,6 +6072,8 @@ version = "3.6.0" description = "threadpoolctl" optional = false python-versions = ">=3.9" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "threadpoolctl-3.6.0-py3-none-any.whl", hash = "sha256:43a0b8fd5a2928500110039e43a5eed8480b918967083ea48dc3ab9f13c4a7fb"}, {file = "threadpoolctl-3.6.0.tar.gz", hash = "sha256:8ab8b4aa3491d812b623328249fab5302a68d2d71745c8a4c719a2fcaba9f44e"}, @@ -5823,6 +6085,8 @@ version = "1.16.1" description = "Python API for efficient storage and retrieval of single-cell data using TileDB" optional = false python-versions = ">=3.9" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "tiledbsoma-1.16.1-cp310-cp310-macosx_13_0_arm64.whl", hash = "sha256:33a1ff7eb5c2f0733507d63c741e6e7b13560d1e03c9f6601e1aca7d65d72f99"}, {file = "tiledbsoma-1.16.1-cp310-cp310-macosx_13_0_x86_64.whl", hash = "sha256:1ca53122f311c1c248df624ee4ad4113d3659def60c86c8ef0d71a687150adcb"}, @@ -5864,6 +6128,8 @@ version = "2.2.1" description = "A lil' TOML parser" optional = false python-versions = ">=3.8" +groups = ["main", "dev"] +markers = "python_version == \"3.10\"" files = [ {file = "tomli-2.2.1-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:678e4fa69e4575eb77d103de3df8a895e1591b48e740211bd1067378c69e8249"}, {file = "tomli-2.2.1-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:023aa114dd824ade0100497eb2318602af309e5a55595f76b626d6d9f3b7b0a6"}, @@ -5905,6 +6171,7 @@ version = "0.13.2" description = "Style preserving TOML library" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "tomlkit-0.13.2-py3-none-any.whl", hash = "sha256:7a974427f6e119197f670fbbbeae7bef749a6c14e793db934baefc1b5f03efde"}, {file = "tomlkit-0.13.2.tar.gz", hash = "sha256:fff5fe59a87295b278abd31bec92c15d9bc4a06885ab12bcea52c71119392e79"}, @@ -5916,6 +6183,7 @@ version = "4.67.1" description = "Fast, Extensible Progress Meter" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "tqdm-4.67.1-py3-none-any.whl", hash = "sha256:26445eca388f82e72884e0d580d5464cd801a3ea01e63e5601bdff9ba6a48de2"}, {file = "tqdm-4.67.1.tar.gz", hash = "sha256:f8aef9c52c08c13a65f30ea34f4e5aac3fd1a34959879d7e59e63027286627f2"}, @@ -5937,6 +6205,7 @@ version = "4.4.2" description = "Run-time type checker for Python" optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "typeguard-4.4.2-py3-none-any.whl", hash = "sha256:77a78f11f09777aeae7fa08585f33b5f4ef0e7335af40005b0c422ed398ff48c"}, {file = "typeguard-4.4.2.tar.gz", hash = "sha256:a6f1065813e32ef365bc3b3f503af8a96f9dd4e0033a02c28c4a4983de8c6c49"}, @@ -5947,7 +6216,7 @@ typing_extensions = ">=4.10.0" [package.extras] doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme (>=1.3.0)"] -test = ["coverage[toml] (>=7)", "mypy (>=1.2.0)", "pytest (>=7)"] +test = ["coverage[toml] (>=7)", "mypy (>=1.2.0) ; platform_python_implementation != \"PyPy\"", "pytest (>=7)"] [[package]] name = "types-python-dateutil" @@ -5955,6 +6224,7 @@ version = "2.9.0.20241206" description = "Typing stubs for python-dateutil" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "types_python_dateutil-2.9.0.20241206-py3-none-any.whl", hash = "sha256:e248a4bc70a486d3e3ec84d0dc30eec3a5f979d6e7ee4123ae043eedbb987f53"}, {file = "types_python_dateutil-2.9.0.20241206.tar.gz", hash = "sha256:18f493414c26ffba692a72369fea7a154c502646301ebfe3d56a04b3767284cb"}, @@ -5966,10 +6236,12 @@ version = "4.13.2" description = "Backported and Experimental Type Hints for Python 3.8+" optional = false python-versions = ">=3.8" +groups = ["main", "dev"] files = [ {file = "typing_extensions-4.13.2-py3-none-any.whl", hash = "sha256:a439e7c04b49fec3e5d3e2beaa21755cadbbdc391694e28ccdd36ca4a1408f8c"}, {file = "typing_extensions-4.13.2.tar.gz", hash = "sha256:e6c81219bd689f51865d9e372991c540bda33a0379d5573cddb9a3a23f7caaef"}, ] +markers = {dev = "python_version == \"3.10\""} [[package]] name = "typing-inspect" @@ -5977,6 +6249,7 @@ version = "0.9.0" description = "Runtime inspection utilities for typing module." optional = false python-versions = "*" +groups = ["main"] files = [ {file = "typing_inspect-0.9.0-py3-none-any.whl", hash = "sha256:9ee6fc59062311ef8547596ab6b955e1b8aa46242d854bfc78f4f6b0eff35f9f"}, {file = "typing_inspect-0.9.0.tar.gz", hash = "sha256:b23fc42ff6f6ef6954e4852c1fb512cdd18dbea03134f91f856a95ccc9461f78"}, @@ -5992,6 +6265,7 @@ version = "0.4.0" description = "Runtime typing introspection tools" optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "typing_inspection-0.4.0-py3-none-any.whl", hash = "sha256:50e72559fcd2a6367a19f7a7e610e6afcb9fac940c650290eed893d61386832f"}, {file = "typing_inspection-0.4.0.tar.gz", hash = "sha256:9765c87de36671694a67904bf2c96e395be9c6439bb6c87b5142569dcdd65122"}, @@ -6006,6 +6280,7 @@ version = "2025.2" description = "Provider of IANA time zone data" optional = false python-versions = ">=2" +groups = ["main"] files = [ {file = "tzdata-2025.2-py2.py3-none-any.whl", hash = "sha256:1a403fada01ff9221ca8044d701868fa132215d84beb92242d9acd2147f667a8"}, {file = "tzdata-2025.2.tar.gz", hash = "sha256:b60a638fcc0daffadf82fe0f57e53d06bdec2f36c4df66280ae79bce6bd6f2b9"}, @@ -6017,6 +6292,8 @@ version = "0.5.7" description = "Uniform Manifold Approximation and Projection" optional = false python-versions = "*" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "umap-learn-0.5.7.tar.gz", hash = "sha256:b2a97973e4c6ffcebf241100a8de589a4c84126a832ab40f296c6d9fcc5eb19e"}, {file = "umap_learn-0.5.7-py3-none-any.whl", hash = "sha256:6a7e0be2facfa365a5ed6588447102bdbef32a0ef449535c25c97ea7e680073c"}, @@ -6041,6 +6318,7 @@ version = "1.3.0" description = "RFC 6570 URI Template Processor" optional = false python-versions = ">=3.7" +groups = ["main"] files = [ {file = "uri-template-1.3.0.tar.gz", hash = "sha256:0e00f8eb65e18c7de20d595a14336e9f337ead580c70934141624b6d1ffdacc7"}, {file = "uri_template-1.3.0-py3-none-any.whl", hash = "sha256:a44a133ea12d44a0c0f06d7d42a52d71282e77e2f937d8abd5655b8d56fc1363"}, @@ -6055,6 +6333,7 @@ version = "4.1.1" description = "Implementation of RFC 6570 URI Templates" optional = false python-versions = ">=3.6" +groups = ["main"] files = [ {file = "uritemplate-4.1.1-py2.py3-none-any.whl", hash = "sha256:830c08b8d99bdd312ea4ead05994a38e8936266f84b9a7878232db50b044e02e"}, {file = "uritemplate-4.1.1.tar.gz", hash = "sha256:4346edfc5c3b79f694bccd6d6099a322bbeb628dbf2cd86eea55a456ce5124f0"}, @@ -6066,6 +6345,7 @@ version = "2.2.0" description = "URL normalization for Python" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "url_normalize-2.2.0-py3-none-any.whl", hash = "sha256:3fe387b62f5b66db94304bc703bf6d34de52aaa9590d4d1f1bbdf305a1430064"}, {file = "url_normalize-2.2.0.tar.gz", hash = "sha256:0f0b7cc95a95d2d9b0c9a51d47a326559bc05bd1558accdada21bb0c9504de85"}, @@ -6083,14 +6363,15 @@ version = "1.26.20" description = "HTTP library with thread-safe connection pooling, file post, and more." optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7" +groups = ["main", "dev"] files = [ {file = "urllib3-1.26.20-py2.py3-none-any.whl", hash = "sha256:0ed14ccfbf1c30a9072c7ca157e4319b70d65f623e91e7b32fadb2853431016e"}, {file = "urllib3-1.26.20.tar.gz", hash = "sha256:40c2dc0c681e47eb8f90e7e27bf6ff7df2e677421fd46756da1161c39ca70d32"}, ] [package.extras] -brotli = ["brotli (==1.0.9)", "brotli (>=1.0.9)", "brotlicffi (>=0.8.0)", "brotlipy (>=0.6.0)"] -secure = ["certifi", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "ipaddress", "pyOpenSSL (>=0.14)", "urllib3-secure-extra"] +brotli = ["brotli (==1.0.9) ; os_name != \"nt\" and python_version < \"3\" and platform_python_implementation == \"CPython\"", "brotli (>=1.0.9) ; python_version >= \"3\" and platform_python_implementation == \"CPython\"", "brotlicffi (>=0.8.0) ; (os_name != \"nt\" or python_version >= \"3\") and platform_python_implementation != \"CPython\"", "brotlipy (>=0.6.0) ; os_name == \"nt\" and python_version < \"3\""] +secure = ["certifi", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "ipaddress ; python_version == \"2.7\"", "pyOpenSSL (>=0.14)", "urllib3-secure-extra"] socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"] [[package]] @@ -6099,6 +6380,7 @@ version = "0.34.0" description = "Python Data Validation for Humans™" optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "validators-0.34.0-py3-none-any.whl", hash = "sha256:c804b476e3e6d3786fa07a30073a4ef694e617805eb1946ceee3fe5a9b8b1321"}, {file = "validators-0.34.0.tar.gz", hash = "sha256:647fe407b45af9a74d245b943b18e6a816acf4926974278f6dd617778e1e781f"}, @@ -6113,6 +6395,7 @@ version = "6.0.0" description = "Filesystem events monitoring" optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "watchdog-6.0.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:d1cdb490583ebd691c012b3d6dae011000fe42edb7a82ece80965b42abd61f26"}, {file = "watchdog-6.0.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:bc64ab3bdb6a04d69d4023b29422170b74681784ffb9463ed4870cf2f3e66112"}, @@ -6155,6 +6438,7 @@ version = "24.11.1" description = "A library for working with the color formats defined by HTML and CSS." optional = false python-versions = ">=3.9" +groups = ["main"] files = [ {file = "webcolors-24.11.1-py3-none-any.whl", hash = "sha256:515291393b4cdf0eb19c155749a096f779f7d909f7cceea072791cb9095b92e9"}, {file = "webcolors-24.11.1.tar.gz", hash = "sha256:ecb3d768f32202af770477b8b65f318fa4f566c22948673a977b00d589dd80f6"}, @@ -6166,6 +6450,7 @@ version = "1.17.2" description = "Module for decorators, wrappers and monkey patching." optional = false python-versions = ">=3.8" +groups = ["main"] files = [ {file = "wrapt-1.17.2-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:3d57c572081fed831ad2d26fd430d565b76aa277ed1d30ff4d40670b1c0dd984"}, {file = "wrapt-1.17.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:b5e251054542ae57ac7f3fba5d10bfff615b6c2fb09abeb37d2f1463f841ae22"}, @@ -6254,6 +6539,7 @@ version = "0.13.0" description = "Makes working with XML feel like you are working with JSON" optional = false python-versions = ">=3.4" +groups = ["main"] files = [ {file = "xmltodict-0.13.0-py2.py3-none-any.whl", hash = "sha256:aa89e8fd76320154a40d19a0df04a4695fb9dc5ba977cbb68ab3e4eb225e7852"}, {file = "xmltodict-0.13.0.tar.gz", hash = "sha256:341595a488e3e01a85a9d8911d8912fd922ede5fecc4dce437eb4b6c8d037e56"}, @@ -6265,6 +6551,8 @@ version = "1.20.0" description = "Yet another URL library" optional = false python-versions = ">=3.9" +groups = ["main"] +markers = "python_version <= \"3.12\"" files = [ {file = "yarl-1.20.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:f1f6670b9ae3daedb325fa55fbe31c22c8228f6e0b513772c2e1c623caa6ab22"}, {file = "yarl-1.20.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:85a231fa250dfa3308f3c7896cc007a47bc76e9e8e8595c20b7426cac4884c62"}, @@ -6381,6 +6669,6 @@ propcache = ">=0.2.1" docs = [] [metadata] -lock-version = "2.0" +lock-version = "2.1" python-versions = "^3.10" content-hash = "4d2569515d121f2c220cc412e72579e4acdb561c3e75cd0d45fba2f28495c38f" diff --git a/pyproject.toml b/pyproject.toml index c713923..cc6553e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "cas-tools" -version = "1.1.7" +version = "1.1.8" description = "Cell Annotation Schema tools." authors = ["Huseyin Kir ", "Ugur Bayindir "] license = "Apache-2.0 license" diff --git a/src/cas/flatten_data_to_anndata.py b/src/cas/flatten_data_to_anndata.py index f8da6c8..7cb32b9 100644 --- a/src/cas/flatten_data_to_anndata.py +++ b/src/cas/flatten_data_to_anndata.py @@ -153,45 +153,63 @@ def export_cas_object2cap( def process_annotations(annotations, obs_index, parent_cell_ids, fill_na): - """ - Processes annotations and generates flattened data for obs dataset. + """Process CAS annotations into flattened obs fields for an AnnData object. + + This function maps cell-level annotations (from CAS JSON) onto the AnnData + `obs` index. For each annotation, it creates or updates a column in the + flattened data and assigns the annotation value to the matching cell IDs. Args: - annotations (list): List of annotations. - obs_index (np.ndarray): Array representing the index of the obs dataset. - parent_cell_ids (dict): Dictionary containing parent cell ids. + annotations (list[dict]): + List of CAS annotation dictionaries. Each annotation may contain + cell IDs (`CELL_IDS`), a labelset (`LABELSET`), a label (`CELL_LABEL`), + and other metadata fields. + obs_index (np.ndarray): + Array of cell IDs representing the index of the AnnData `obs` dataset. + parent_cell_ids (dict): + Mapping from `cell_set_accession` to lists of parent cell IDs, + used when `CELL_IDS` are not explicitly present in the annotation. fill_na (bool): + If True, ensures missing values remain as `pd.NA`. + Otherwise missing entries may stay as empty strings. Returns: - dict: Dictionary containing flattened data. + dict[str, pd.Series]: + A dictionary where keys are annotation-derived column names and + values are pandas Series aligned to `obs_index`. Each Series is + categorical, containing the annotation values or `pd.NA` for cells + without an assigned value. + + Notes: + - Each annotation only updates rows corresponding to its `cell_ids`. + - Columns are initialized with `pd.NA` and never overwritten with NA + in subsequent iterations, so multiple class values are preserved. + - Categories in the resulting categorical Series are derived from + the unique non-null values observed for each column. """ accession_manager = HashAccessionManager() flatten_data = {} + for ann in annotations: cell_ids = ann.get(CELL_IDS, []) if not cell_ids: cell_ids = parent_cell_ids.get(ann.get("cell_set_accession", [])) author_annotations = ann.get(AUTHOR_ANNOTATION_FIELDS, {}) - # TODO Do we still need/want this? - author_annotations.update( - { - CELLHASH: ann.get("cell_set_accession") - if is_hash_accession(ann.get("cell_set_accession", None)) - else accession_manager.generate_accession_id( - cell_ids=cell_ids, labelset=ann[LABELSET], suppress_warnings=True - ) - } - ) + author_annotations.update({ + CELLHASH: ann.get("cell_set_accession") if is_hash_accession(ann.get("cell_set_accession", None)) + else accession_manager.generate_accession_id( + cell_ids=cell_ids, labelset=ann[LABELSET], suppress_warnings=True + ) + }) ann[AUTHOR_ANNOTATION_FIELDS] = author_annotations if not cell_ids: - # This can occur in cases of multiple inheritance (e.g., basal ganglia data) - # or when the labelset is rankless. continue - # Convert cell_ids to a list if it's not already for np.isin + if not isinstance(cell_ids, list): cell_ids = list(cell_ids) + mask = np.isin(obs_index, cell_ids) for k, v in ann.items(): @@ -199,27 +217,27 @@ def process_annotations(annotations, obs_index, parent_cell_ids, fill_na): continue key = f"{ann[LABELSET]}--{k}" if k != CELL_LABEL else ann[LABELSET] - value = ", ".join( - sorted([str(value) for value in v] if isinstance(v, list) else [str(v)]) - ) + value = ", ".join(sorted([str(x) for x in v] if isinstance(v, list) else [str(v)])) + # init once with NA (not empty string) if key not in flatten_data: - flatten_data[key] = pd.Series("", index=obs_index) + flatten_data[key] = pd.Series(pd.NA, index=obs_index, dtype="object") + flatten_data[key].loc[mask] = value - if fill_na: - flatten_data[key].loc[~mask] = pd.NA - # Convert relevant columns to categorical after the loop + # Post-processing for key in flatten_data: - # Get unique values and convert the Series to categorical - unique_values = pd.unique(flatten_data[key]) - unique_values = unique_values[~pd.isna(unique_values)] - flatten_data[key] = pd.Series( - pd.Categorical(flatten_data[key], categories=unique_values), index=obs_index - ) + col = flatten_data[key] + if fill_na: + col = col.replace("", pd.NA) + + cats = pd.Index(pd.unique(col.dropna())) + flatten_data[key] = pd.Series(pd.Categorical(col, categories=cats), index=col.index) + return flatten_data + def generate_uns_json(input_json): """ Generates a dictionary representing the uns (unstructured) field in an AnnData object from a given JSON input.