EDdocs/install.sh at master · ccp4/EDdocs · GitHub

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python3 -m venv .env
source .env/bin/activate
pip install mkdocs mkdocs-macros-plugin python-markdown-math pymdown-extensions


if [ $# -eq 1 ];then
  serv=serv6

  ssh-copy-id -i .ssh/id_serv6.pub $serv
  scp .bash_aliases $serv:

  # ccp4 docs on machine
  ssh $serv
  wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
  pip install mkdocs pymdown-extensions python-markdown-math markdown-meta-extension

  #ED(gcc and g++ need be installed)
  scp ~/.ssh/id_rsa_git $serv:.ssh
  cd $ED
  git clone https://www.github.com/ccp4/electron-diffraction.git
  cd

  ##ED tests
  ssh $serv "mkdir bin"
  sudo apt-get install pandoc
  pip install IPython wheel pytest pytest-html pytest-cov tarikDrevonUtils
  scp EDtests.sh EDtest_tab.sh ptest.sh ccp4tab.sh $serv:bin
  printf "
  */60 * * * * /home/lii26466/bin/ccp4tab.sh\n
  0 1 * * * /home/lii26466/bin/EDtests.sh\ng
  #26 11 * * * /home/lii26466/bin/EDtests.sh #test_continuous.py
  " >> /var/spool/cron/crontabs/lii26466

  ## ED documentation
  pip3 install sphinx
fi