environment.yml

name: glioma-seg-37
channels:
  - anaconda
  - defaults
  - conda-forge
dependencies:
  - _libgcc_mutex=0.1=main
  - _openmp_mutex=5.1=1_gnu
  - ca-certificates=2022.07.19=h06a4308_0
  - certifi=2022.6.15=py37h06a4308_0
  - cudatoolkit=10.0.130=0
  - cudnn=7.6.5=cuda10.0_0
  - libedit=3.1.20210910=h7f8727e_0
  - libffi=3.2.1=hf484d3e_1007
  - libgcc-ng=11.2.0=h1234567_1
  - libgomp=11.2.0=h1234567_1
  - libstdcxx-ng=11.2.0=h1234567_1
  - ncurses=6.3=h5eee18b_3
  - openssl=1.0.2u=h7b6447c_0
  - pip=22.2.2=py37h06a4308_0
  - python=3.7.0=h6e4f718_3
  - readline=7.0=h7b6447c_5
  - setuptools=65.5.0=py37h06a4308_0
  - sqlite=3.33.0=h62c20be_0
  - tk=8.6.12=h1ccaba5_0
  - wheel=0.37.1=pyhd3eb1b0_0
  - xz=5.2.6=h5eee18b_0
  - zlib=1.2.13=h5eee18b_0
  - dcm2niix
  - pip:
    - absl-py==1.3.0
    - astor==0.8.1
    - blinker==1.5
    - configparser==5.3.0
    - dicom2nifti==2.4.3
    - gast==0.2.2
    - google-pasta==0.2.0
    - grpcio==1.50.0
    - h5py==2.10.0
    - imageio==2.22.3
    - importlib-metadata==5.0.0
    - keras-applications==1.0.8
    - keras-preprocessing==1.1.2
    - markdown==3.4.1
    - markupsafe==2.1.1
    - networkx==2.6.3
    - nibabel==4.0.2
    - niftynet==0.4.0
    - numpy==1.18.5
    - opencv-python==4.6.0.66
    - opt-einsum==3.3.0
    - packaging==21.3
    - pandas==1.1.5
    - pillow==9.3.0
    - protobuf==3.20 #.3
    - pyparsing==3.0.9
    - python-dateutil==2.8.2
    - pytz==2022.6
    - pywavelets==1.3.0
    - pyyaml==6.0
    - scikit-image==0.19.3
    - scipy==1.7.3
    - simpleitk==2.2.0
    - six==1.16.0
    - tensorboard==1.15.0
    - tensorflow-estimator==1.15.1
    - tensorflow-gpu==1.15.5
    - termcolor==2.1.0
    - tifffile==2021.11.2
    - typing-extensions==4.4.0
    - werkzeug==2.2.2
    - wrapt==1.14.1
    - zipp==3.10.0
prefix: /opt/miniconda/envs/glioma-seg-37