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Mistakes in copy number variation of CCLE 2019 #2123

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keremw opened this issue Nov 14, 2024 · 1 comment
Open

Mistakes in copy number variation of CCLE 2019 #2123

keremw opened this issue Nov 14, 2024 · 1 comment
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@keremw
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keremw commented Nov 14, 2024

Hi,
I tried to look into a few cell lines in the CCLE 2019 and noticed some mistakes in copy losses. Specifically in the cell line NCIH1290 I found that genes that show loss as PIK3CA and INPP4B, when I go to the original data that is in Depmap, the losses are not present. It might be due to different ploidies of the cell lines but I wanted to let you know that it might be better to update the results to match the current knowledge.
Thank you very much for the the best website that I am using a lot.
Best wishes,
Kerem
@dippindots dippindots transferred this issue from cBioPortal/cbioportal Jan 15, 2025
@ritikakundra
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Hi @keremw would it possible to send the oncoprint query for this specific cellline?

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@keremw @ritikakundra @dippindots