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if you run the following query against the new clickhouse mskcc database, you'll see it returns 0 when it should return results based on unfiltered chart.
SELECT COUNT(*)
FROM sample_to_gene_panel_derived
WHERE alteration_type = 'COPY_NUMBER_ALTERATION' AND gene_panel_id = 'WES'
AND
sample_unique_id IN (
SELECT sample_unique_id
FROM sample_derived
WHERE cancer_study_identifier IN
(
'mskimpact'
)
INTERSECT
SELECT sample_unique_id
FROM clinical_data_derived
WHERE attribute_name = 'MUTATION_COUNT' AND
type='sample'
AND ((
match(attribute_value, '^[-+]?[0-9]*[.,]?[0-9]+$')
AND abs(
minus(
multiIf(
(startsWith(attribute_value, '<=') OR startsWith(attribute_value, '>=')),
cast(substr(attribute_value, 3) as float),
startsWith(attribute_value, '<'),
cast(substr(attribute_value, 2) as float) - exp(-10),
startsWith(attribute_value, '>'),
cast(substr(attribute_value, 2) as float) + exp(-10),
cast(attribute_value as float)
)
,
4
)
) < exp(-11)
) OR ( match(attribute_value, '^[-+]?[0-9]*[.,]?[0-9]+$')
AND abs(
minus(
multiIf(
(startsWith(attribute_value, '<=') OR startsWith(attribute_value, '>=')),
cast(substr(attribute_value, 3) as float),
startsWith(attribute_value, '<'),
cast(substr(attribute_value, 2) as float) - exp(-10),
startsWith(attribute_value, '>'),
cast(substr(attribute_value, 2) as float) + exp(-10),
cast(attribute_value as float)
)
,
5
)
) < exp(-11)
) OR ( match(attribute_value, '^[-+]?[0-9]*[.,]?[0-9]+$')
AND abs(
minus(
multiIf(
(startsWith(attribute_value, '<=') OR startsWith(attribute_value, '>=')),
cast(substr(attribute_value, 3) as float),
startsWith(attribute_value, '<'),
cast(substr(attribute_value, 2) as float) - exp(-10),
startsWith(attribute_value, '>'),
cast(substr(attribute_value, 2) as float) + exp(-10),
cast(attribute_value as float)
)
,
6
)
) < exp(-11)
) OR ( match(attribute_value, '^[-+]?[0-9]*[.,]?[0-9]+$')
AND abs(
minus(
multiIf(
(startsWith(attribute_value, '<=') OR startsWith(attribute_value, '>=')),
cast(substr(attribute_value, 3) as float),
startsWith(attribute_value, '<'),
cast(substr(attribute_value, 2) as float) - exp(-10),
startsWith(attribute_value, '>'),
cast(substr(attribute_value, 2) as float) + exp(-10),
cast(attribute_value as float)
)
,
7
)
) < exp(-11)
) OR ( match(attribute_value, '^[-+]?[0-9]*[.,]?[0-9]+$')
AND abs(
minus(
multiIf(
(startsWith(attribute_value, '<=') OR startsWith(attribute_value, '>=')),
cast(substr(attribute_value, 3) as float),
startsWith(attribute_value, '<'),
cast(substr(attribute_value, 2) as float) - exp(-10),
startsWith(attribute_value, '>'),
cast(substr(attribute_value, 2) as float) + exp(-10),
cast(attribute_value as float)
)
,
8
)
) < exp(-11)
) OR ( match(attribute_value, '^[-+]?[0-9]*[.,]?[0-9]+$')
AND abs(
minus(
multiIf(
(startsWith(attribute_value, '<=') OR startsWith(attribute_value, '>=')),
cast(substr(attribute_value, 3) as float),
startsWith(attribute_value, '<'),
cast(substr(attribute_value, 2) as float) - exp(-10),
startsWith(attribute_value, '>'),
cast(substr(attribute_value, 2) as float) + exp(-10),
cast(attribute_value as float)
)
,
9
)
) < exp(-11)
) OR ( match(attribute_value, '^[-+]?[0-9]*[.,]?[0-9]+$')
AND abs(
minus(
multiIf(
(startsWith(attribute_value, '<=') OR startsWith(attribute_value, '>=')),
cast(substr(attribute_value, 3) as float),
startsWith(attribute_value, '<'),
cast(substr(attribute_value, 2) as float) - exp(-10),
startsWith(attribute_value, '>'),
cast(substr(attribute_value, 2) as float) + exp(-10),
cast(attribute_value as float)
)
,
10
)
) < exp(-11)
))
INTERSECT
SELECT sample_unique_id
FROM clinical_data_derived
WHERE attribute_name = 'MUTATION_COUNT' AND
type='sample'
AND ((
(
multiIf(
attribute_value=''
OR upperUTF8(attribute_value)='NA'
OR upperUTF8(attribute_value)='NAN'
OR upperUTF8(attribute_value)='N/A'
,
'NA',
upperUTF8(attribute_value)='TRUE'
,
'True',
upperUTF8(attribute_value)='FALSE'
,
'False',
attribute_value
)
) = ''
) OR ( (
multiIf(
attribute_value=''
OR upperUTF8(attribute_value)='NA'
OR upperUTF8(attribute_value)='NAN'
OR upperUTF8(attribute_value)='N/A'
,
'NA',
upperUTF8(attribute_value)='TRUE'
,
'True',
upperUTF8(attribute_value)='FALSE'
,
'False',
attribute_value
)
) = ''
) OR ( (
multiIf(
attribute_value=''
OR upperUTF8(attribute_value)='NA'
OR upperUTF8(attribute_value)='NAN'
OR upperUTF8(attribute_value)='N/A'
,
'NA',
upperUTF8(attribute_value)='TRUE'
,
'True',
upperUTF8(attribute_value)='FALSE'
,
'False',
attribute_value
)
) = ''
) OR ( (
multiIf(
attribute_value=''
OR upperUTF8(attribute_value)='NA'
OR upperUTF8(attribute_value)='NAN'
OR upperUTF8(attribute_value)='N/A'
,
'NA',
upperUTF8(attribute_value)='TRUE'
,
'True',
upperUTF8(attribute_value)='FALSE'
,
'False',
attribute_value
)
) = ''
) OR ( (
multiIf(
attribute_value=''
OR upperUTF8(attribute_value)='NA'
OR upperUTF8(attribute_value)='NAN'
OR upperUTF8(attribute_value)='N/A'
,
'NA',
upperUTF8(attribute_value)='TRUE'
,
'True',
upperUTF8(attribute_value)='FALSE'
,
'False',
attribute_value
)
) = ''
) OR ( (
multiIf(
attribute_value=''
OR upperUTF8(attribute_value)='NA'
OR upperUTF8(attribute_value)='NAN'
OR upperUTF8(attribute_value)='N/A'
,
'NA',
upperUTF8(attribute_value)='TRUE'
,
'True',
upperUTF8(attribute_value)='FALSE'
,
'False',
attribute_value
)
) = ''
) OR ( (
multiIf(
attribute_value=''
OR upperUTF8(attribute_value)='NA'
OR upperUTF8(attribute_value)='NAN'
OR upperUTF8(attribute_value)='N/A'
,
'NA',
upperUTF8(attribute_value)='TRUE'
,
'True',
upperUTF8(attribute_value)='FALSE'
,
'False',
attribute_value
)
) = ''
))
)
The text was updated successfully, but these errors were encountered:
if you run the following query against the new clickhouse mskcc database, you'll see it returns 0 when it should return results based on unfiltered chart.
The text was updated successfully, but these errors were encountered: